Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_D08
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 117 2e-27
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 116 5e-27
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.0
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 4.0
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 4.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.0
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 9.2
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 117 bits (282), Expect = 2e-27
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Frame = -1
Query: 749 IQXKGPLIXFNXIRXXFAXSATXPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLD 570
+Q +GPL+ FN PGVE LAPGGH GRFVIWT+SAFG LD
Sbjct: 202 VQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLD 261
Query: 569 PLFGSWKTPSKQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPL 396
+FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL
Sbjct: 262 SVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPL 321
Query: 395 TNNKAMLKLNPYAAVXEEESYLRAAQKEELEG 300
N + +LNPYA + L + + G
Sbjct: 322 KNKAVLARLNPYAKAYKANVKLNTGKTPKAAG 353
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 116 bits (278), Expect = 5e-27
Identities = 61/133 (45%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Frame = -1
Query: 749 IQXKGPLIXFNXIRXXFAXSATXPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLD 570
+Q +GPL+ FN PGVE LAPGGH GRFVIWT+SAFG LD
Sbjct: 202 VQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLD 261
Query: 569 PLFGSWKTPSKQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPL 396
+FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL
Sbjct: 262 SVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPL 321
Query: 395 TNNKAMLKLNPYA 357
N + +LNPYA
Sbjct: 322 KNKAVLSRLNPYA 334
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -1
Query: 539 KQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 360
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 359 AAVXEEESYLRAA 321
+ +++ +++
Sbjct: 788 PQITVKQNTTKSS 800
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 357 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 518
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 616 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ 506
+D+ S+ LS H+ T +S R H ST PSQ
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQ 335
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 610 VSSSGLSPHSAGLTPYSGHGRHHRNK 533
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 383 AMLKLNPYAAVXEEESYLRAAQKEELE 303
A+LK + Y ++ EEES R ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 551 KTPSKQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPN 435
KTPS +K+ P P +TN D L ++ V + P+
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS 624
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Frame = -1
Query: 530 KNFNLPQPKMTNTDLTRLLKSDEIRKVLRAP----------NKRVIRATRKLNPL-TNNK 384
KNF + M+ ++ +L DE+R + R +K +I +++ + L N +
Sbjct: 136 KNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQ 195
Query: 383 AMLKLNPYAAVXEEESYLR 327
L + + + ++ES+LR
Sbjct: 196 QFLSFDAFGVMHKQESFLR 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,192
Number of Sequences: 5004
Number of extensions: 37113
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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