Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_D08
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 122 3e-28
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 119 3e-27
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.4
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.4
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 29 3.1
02_04_0073 - 19471254-19472681 29 4.1
08_02_0934 + 22747742-22748644 28 9.6
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.6
03_03_0122 - 14617879-14618871 28 9.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 122 bits (294), Expect = 3e-28
Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = -1
Query: 749 IQXKGPLIXFNXIRXXFAXS-ATXPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRL 573
I KGPLI + + PGV+ LAPGGH GRFVIWT+SAF +L
Sbjct: 206 INRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKL 265
Query: 572 DPLFGSWKTPSKQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 393
+ ++G+++ PS +KK F LP+PKM N DL R++ SDE++ V++ NK V R ++ NPL
Sbjct: 266 EEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLK 325
Query: 392 NNKAMLKLNPYAAVXEEESYLRAAQK 315
N A+LKLNPY + + L A +
Sbjct: 326 NVAAVLKLNPYFGTARKMATLAEAAR 351
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 119 bits (286), Expect = 3e-27
Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Frame = -1
Query: 749 IQXKGPLIXFNXIRXXFAXS-ATXPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRL 573
I KGPLI + + PGV+ LAPGGH GRFVIWT+ AF +L
Sbjct: 205 INRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKL 264
Query: 572 DPLFGSWKTPSKQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 393
D ++G + TP+ +KK F LP+PKM N DL+RL+ SDE++ V++ NK V + NPL
Sbjct: 265 DEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLK 324
Query: 392 NNKAMLKLNPYAAVXEEESYLRAAQK 315
N A+LKLNPY + + L A +
Sbjct: 325 NVAAVLKLNPYFGTARKMAALAEAAR 350
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 366 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 455
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 632 APG--GHXGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQ 510
APG G GR+V+ SA LDP F SW S++ K F++ +
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEE 711
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 557 SWKTPSKQKKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPNKRVIRATR--KLNPLTNNK 384
S ++PS + P P +T L R + DE L+A ++ ++A + +L L
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426
Query: 383 AMLKLNPYAAVXEEESYLRAAQKEELEGS 297
A EEE + ++EELE S
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEELESS 455
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 592 SPHSAGLTPYSGHGRHHRNKR 530
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>08_02_0934 + 22747742-22748644
Length = 300
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = -2
Query: 589 PHSAGLTPYSGHGRHHRNKRRTSTCPSQR*PTLTSHVFSSLMRSGRSSV-LPTNA*SVLH 413
P++A Y GH HHR T+ P S S SG S+ P N V
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210
Query: 412 AN*TRSPITRRC 377
A R P C
Sbjct: 211 AGMWRLPAAASC 222
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 614 GRFVIWTQSAFGRL-DPLFGSWK 549
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 614 GRFVIWTQSAFGRL-DPLFGSWK 549
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,671
Number of Sequences: 37544
Number of extensions: 276929
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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