Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_D08
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   101   4e-22
AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical...    29   3.7  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   6.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  101 bits (243), Expect = 4e-22
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
 Frame = -1

Query: 746 QXKGPLIXFNXIRXXFAXSATXPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDP 567
           Q  GP++ +             PGV+           LAPGGH GR +IWT+SAF +LD 
Sbjct: 202 QKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDT 261

Query: 566 LFGSWKTPSKQ-KKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 390
           ++G+    S Q KK +++P P M N+D +R+++S+E+ K +RAP K  +      NPL  
Sbjct: 262 IYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKK 321

Query: 389 NKAMLKLNPYAAVXEEES 336
              + KLNPYA++  + S
Sbjct: 322 RTLLYKLNPYASILRKAS 339


>AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical
           protein Y18H1A.2 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -2

Query: 394 PITRRC*NSILTRPXLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRER 221
           P+ RR     L  P LKRK + E R+RK  +  +D+E+   K  K++   K +K R R
Sbjct: 137 PLDRRKARDAL--PCLKRKELEEERKRK--REDSDSEEKAKKRHKKDKKKKKKKHRHR 190


>AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical
           protein Y47H9C.10 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = -1

Query: 533 KKNFNLPQPKMTNTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAA 354
           K ++N   P  T  D    +    + K+L A    V   ++KL  L + +  +  N Y  
Sbjct: 23  KMSYNPKSPIFT--DFPDTVVHTVLEKLLPAERMVVRNVSKKLRNLFDERYRVIKNVYMQ 80

Query: 353 VXEEESYLRAAQKEELEGSG*C 288
           V +EE+ L     EELE +  C
Sbjct: 81  VQDEEAILFFENHEELEKTFSC 102


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -2

Query: 628 REVXLDVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQR*PTLTSHVFSSLMRS 458
           R    + ++S   P+S   TP S     G+ HR     S       PT+     SS+M S
Sbjct: 527 RSFSSNTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSS 586

Query: 457 GRSSVLPTNA*SVLHAN*TRSPIT 386
             S  LP+ + S  + N +   +T
Sbjct: 587 SNSIRLPSTSFSNQYPNNSTCSLT 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,689
Number of Sequences: 27780
Number of extensions: 213059
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)