Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_D07
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   3.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.2  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.2  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 254 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 159
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 141 LRDLPPVGRSSPCFFRLLWSLCKVLIPYSSQFW 43
           L++L  +G  SPC  RL   L  V++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 682 INPDHQX-PXFHTPTXPXLTSXSINPXTPX*KEFAPGLKPPXSSEAPSAYLTPSSLGMXK 506
           +N DH   P   +P      + S+NP TP     +P + PP S+ +P     P S     
Sbjct: 251 LNTDHHGRPILLSPLN--YQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS---SD 305

Query: 505 GGFAPLF 485
           G  AP F
Sbjct: 306 GHLAPAF 312


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 329 LVTHKELALKVSSIIGTRVYVFDPSCY 249
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 469 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 383
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 114 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 215
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,738
Number of Sequences: 5004
Number of extensions: 49688
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)