Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_D07
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 32 0.44
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.1
04_04_0772 + 27970494-27972875 29 4.1
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 4.1
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 5.5
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.6
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = -2
Query: 353 KVKIAGNNLVTHKELALKVSSIIGTRVYVFDPSCY-----FSTPPFDTVLYDNIRTVLKD 189
KV GN+ V HKE + ++ GT+ + + ST P TV+ D+ ++ L++
Sbjct: 705 KVATTGNSSVVHKECSSAITR-KGTKEVTMPTNAFLSNQILSTSPRGTVVADSYQSNLQN 763
Query: 188 NKTALLSASIQASLPSSEIYRQLVDPRHVSSDSF 87
++ +L ++ + + S +++ P + S +F
Sbjct: 764 SRKVVLDSAPNSVMSSPSRSPRILCPDQIPSSAF 797
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>04_04_0772 + 27970494-27972875
Length = 793
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Frame = +3
Query: 354 IVDDGLVCGHDDVFDEGVS-----WRRGAEY---AWNDD**GAKLVIHHSLEN-KGAKPP 506
I+DDG+ GH G+ W ++ N+ GA+ + KG + P
Sbjct: 168 ILDDGIYAGHPSFDGAGMKPPPAKWSGRCDFNKTVCNNKLIGARSYFESAKWKWKGLRDP 227
Query: 507 LXMPSDEGVRYADGASDDXGGFNPGANSFXYGV 605
+ +P +EG +S G F PGAN Y V
Sbjct: 228 V-LPINEGQHGTHTSSTAAGSFVPGANVSGYAV 259
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = -2
Query: 437 PRILRSPPPTHPLIEDVVMATNQAIIDYKVKIAGNNLVTHKELALKVSSIIGTRVYVFDP 258
PR SPPP P + A + A++D AG H +LAL SS T + P
Sbjct: 61 PRPQSSPPPPGPAMVGAD-AESSAVVD-----AGEG---HGDLALDSSSAASTDPLLHPP 111
Query: 257 SCYFSTPPFDTVLYDNIRTVLKDNK 183
STP T + D+ + +D +
Sbjct: 112 PSPSSTPSSPTAIADHDAFIEEDGE 136
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.7 bits (61), Expect = 5.5
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = -3
Query: 652 HTPTXPXL--TSXSINPXTPX*KEFAPGLKPPXSSEAPSA--YL-TPSSLGMXKGGFAPL 488
++PT P TS S +P +P +P P + +P++ Y T S ++P
Sbjct: 1683 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPT 1742
Query: 487 FSSE**ITSFAPY*SSFHAYSAPLLQLTPSSKTS 386
S S A Y S HAYS +L+P S+TS
Sbjct: 1743 SPSY--NPSSAKY-SPSHAYSPSSPRLSPYSQTS 1773
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = -3
Query: 652 HTPTXPXL--TSXSINPXTPX*KEFAPGLKPPXSSEAPSA-YLTPSSLGMXKG-GFAPLF 485
++PT P TS + +P +P +PG P S +PS+ PSS+ ++P
Sbjct: 1766 YSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSP-- 1823
Query: 484 SSE**ITSFAP-Y*SSFHAYSAPLLQLTPSSK 392
SS +S +P Y + +YS P +P+S+
Sbjct: 1824 SSPNYYSSTSPTYSPTSPSYSQPSPSYSPTSR 1855
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,686,008
Number of Sequences: 37544
Number of extensions: 359492
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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