Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_C18
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 38 0.002
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 35 0.011
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 35 0.015
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 35 0.015
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 31 0.14
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 31 0.14
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 30 0.32
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 30 0.42
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 30 0.42
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 29 0.98
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.3
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 28 1.7
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 28 1.7
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 2.3
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 27 3.0
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 27 3.0
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 27 3.0
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 27 3.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 3.0
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 3.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 6.9
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 6.9
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 6.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.9
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 6.9
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 9.1
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 9.1
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -1
Query: 679 IMDLREGRQLQQHDFSSQIFSLGYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHLRESCV 500
+ D+ G Q + ++ + P G+++A G + + + + QLH E V
Sbjct: 402 LWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESV 461
Query: 499 LSLRFASCGKWFVSTGKDNLLNAW 428
S+ F+ GK+ VS DN + W
Sbjct: 462 YSVAFSPDGKYLVSGSLDNTIKLW 485
Score = 36.3 bits (80), Expect = 0.005
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Frame = -1
Query: 619 SLGYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHL-RESCVLSLRFASCGKWFVSTGKDN 443
S+ + P G++LA G+E+ + + + Y+L E + SL F+ GK VS D
Sbjct: 339 SVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDR 398
Query: 442 LLNAWRTPYGASIFQSKEXXXXXXXXXXXXDKYIVTGSGDKKATVY 305
+ W G ++I GS DK ++
Sbjct: 399 TVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIW 444
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 759 HTD-GASCIDISADGTKLWTGGLDNTVRSW 673
HTD G + + S DG + G LD +R W
Sbjct: 415 HTDDGVTTVMFSPDGQFIAAGSLDKVIRIW 444
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSWI*EKEDS 652
HTD +D S DG L TG DNTVR W ED+
Sbjct: 363 HTDIVLTLDSSEDGVWLATGAKDNTVRLWNLNIEDN 398
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = -1
Query: 568 SNVEVLHAVKPDKYQ----LHLRESCVLSLRFASCGKWFVSTGKDNLLNAW 428
SN E + + D Q L VL+L + G W + KDN + W
Sbjct: 341 SNTEFIDVISTDGTQVFGVLEGHTDIVLTLDSSEDGVWLATGAKDNTVRLW 391
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 771 TVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T+ HT+ SC+ + D + + TG +DNT+R W
Sbjct: 172 TMKGHTNWVSCVAWAPDASIIATGSMDNTIRFW 204
Score = 32.7 bits (71), Expect = 0.060
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 768 VPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
+P H D +D S DG ++ +GG D VR W
Sbjct: 469 LPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
H D ID S DGT + TGG+D+ VR W
Sbjct: 103 HKDSIVAIDWSFDGTYIATGGMDSQVRLW 131
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 750 GASCIDISADGTKLWTGGLDNTVRSWI*EKEDSC-NSTISAL 628
G SC+ S DG L + G DN +R W + C N I L
Sbjct: 300 GISCLSFSQDGNYLLSRGEDNALRVWDLRNSNKCVNERIDIL 341
Score = 29.5 bits (63), Expect = 0.56
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 765 PRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
P H+ + +G++ +TG LDNT+ W
Sbjct: 86 PGHSKIVTTTTFDKNGSRFYTGSLDNTIHCW 116
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 738 IDISADGTKLWTGGLDNTVRSW 673
I I DG+++ TGGLD T+R W
Sbjct: 24 IHIHPDGSRIATGGLDGTIRIW 45
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -1
Query: 667 REGRQLQQHDFSSQIFSLGYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHLRESCVLSLR 488
R R+L HD Q Y + ++VG+++S + ++ +S V +
Sbjct: 125 RSYRRLLGHDNDIQDLCWSY-DSQLVVSVGLDSSIIVWNGTTFERLKRIEAHQSHVKGIT 183
Query: 487 FASCGKWFVSTGKDNLLNAWR 425
F GK+F + D + WR
Sbjct: 184 FDPAGKYFATESDDRTIKVWR 204
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 774 TTVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T++ H + S + +++DGT L TG D VR W
Sbjct: 268 TSLTGHENRISSLALTSDGTMLATGSWDECVRLW 301
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 29.9 bits (64), Expect = 0.42
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = -1
Query: 655 QLQQHDFSSQIFSLGYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHL--RESCVLSLRFA 482
Q +Q DF+ + ++ P G ++A + ++ V+V + + K+ L+L + VLS+ +
Sbjct: 527 QTRQIDFTDDVLAVKISPDGRFVAASLLDNTVKVYY-LDSLKFFLNLYGHKLPVLSMDIS 585
Query: 481 SCGKWFVSTGKDNLLNAWRTPYG 413
K V+ D + W +G
Sbjct: 586 YDSKLLVTCSADKNVKIWGLDFG 608
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.42
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
HT+ S ID + GT L +G D TVR W
Sbjct: 137 HTNYVSSIDFNPLGTLLVSGSWDETVRIW 165
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 768 VPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
+P H++ + ISADGT T D R W
Sbjct: 176 LPAHSEPIISVSISADGTLCATASYDGMARIW 207
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 771 TVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T+ HTD + +S +G + TG D T+R W
Sbjct: 499 TLKGHTDRVLYLAMSPNGENIVTGAADETLRFW 531
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
HT S + IS DG+ +GG D T+ W
Sbjct: 191 HTGYVSAVTISPDGSLCASGGRDGTLMLW 219
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 771 TVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T +HT S + S G L++ LD +VR+W
Sbjct: 376 TFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAW 408
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 631 SQIFSLGYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHLRE--SCVLSLRFASCGKWFVS 458
S I +L TG+W+A+G ++ + + Y L + + +L+++S G+ ++
Sbjct: 297 SNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIIT 356
Query: 457 TGKDNLLNAW 428
D + W
Sbjct: 357 GADDGKIKVW 366
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
H D S + S+DG ++ TG D ++ W
Sbjct: 338 HYDALSTLQYSSDGQRIITGADDGKIKVW 366
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVR 679
H D + + IS DG+ L + +DNTVR
Sbjct: 218 HKDIITSLAISKDGSSLLSNSMDNTVR 244
Score = 25.4 bits (53), Expect = 9.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -2
Query: 744 SCIDISADGTKLWTGGLDNTVRSW 673
+ + I+ GT+++ GG+D ++ W
Sbjct: 181 TAVAIAQQGTQVFIGGIDGAIKIW 204
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 774 TTVPRHTDGASCIDISADGTKLWTGGLDNTVRSWI 670
+T+ RHT + + + +G L T G + T+ W+
Sbjct: 61 STLSRHTQAVNVVRFNPEGNILATAGDEGTIMLWV 95
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 765 PRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
P H + ID+S + LDNT+R W
Sbjct: 109 PGHKQTVTSIDVSPADETFLSASLDNTIRLW 139
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 771 TVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T HT DI+ T + +G DNT+R W
Sbjct: 47 TYEGHTGAIWTCDINKSSTLMVSGAADNTMRLW 79
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
HT+ + +S DG + TG D T+R W
Sbjct: 378 HTNRVLYLSMSPDGQSIVTGAGDETLRFW 406
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 768 VPRHTDGASCIDISADGTKLWTGGLDNT-VRSW 673
VP H SC+ IS G+K+ + + T +R W
Sbjct: 171 VPAHDSEISCLGISKTGSKIASSSTNGTLIRIW 203
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTV 682
H +C+ IS DG + TGGLD+ +
Sbjct: 207 HVKEITCLAISNDGRWIVTGGLDHRI 232
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 771 TVPRHTDGASCIDISADGTKLWTGGLDNTVRSWI*EKEDSCNSTISAL 628
T+ H + S + T L +GG D TVR+W K + N S+L
Sbjct: 542 TMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDVFKTNYNNPVSSSL 589
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVR 679
H +C+ ++++ T+L +GGLD V+
Sbjct: 249 HQKSITCLAMNSENTRLLSGGLDGHVK 275
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 181 GKPVCTYATCLYRLVCAIYVYL 116
G+ + AT L+ +VCAIY Y+
Sbjct: 193 GRLILLDATLLFSMVCAIYCYV 214
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 771 TVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T HT+ + I DG L T D TV+ W
Sbjct: 78 TFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVW 110
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Frame = -1
Query: 553 LHAVKPD---KYQLHLRESCVLSLRFASCGKWFVSTGKDNLLNAWRTPYGASIFQSK-EX 386
L A+KP+ K VLS+ + +W +S KD + W G S +
Sbjct: 521 LSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHK 580
Query: 385 XXXXXXXXXXXDKYIVTGSGDKKATVYEV 299
+ +GSGD +A ++ +
Sbjct: 581 NSVISVCFSPDGRQFASGSGDLRARIWSI 609
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 166 YIQASRFNLYIHYNYVSLYSTFAERSLLH*HSHIVR 273
Y +AS F+LY+ Y +L + + +L+H I+R
Sbjct: 1074 YDRASAFSLYMIYRLETLRDSSSALTLMHYFDEIIR 1109
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
H+ G CI + WT G ++++R W
Sbjct: 175 HSRGIECITRQPNTDIFWTCGSESSIRCW 203
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 723 DGTKLWTGGLDNTVRSW 673
D LWT D TVR W
Sbjct: 234 DSEALWTASADKTVREW 250
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -2
Query: 759 HTDGASCIDISADGTKLWTGGLDNTVRSW 673
H + C+ + L TG D+T R W
Sbjct: 486 HQNDVDCVSFHPNAAYLATGSSDHTTRMW 514
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 774 TTVPRHTDGASCIDISADGTKLWTGGLDNTVRSW 673
T++ +HT SC+ + K+ +G D V W
Sbjct: 226 TSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYW 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,466
Number of Sequences: 5004
Number of extensions: 58533
Number of successful extensions: 247
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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