Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_C12
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 29 0.57
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.1
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 4.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.4
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 7.1
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 7.1
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.1
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 7.1
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.4
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 9.4
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.4
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 725 SPLCIKPPXPCDXGYINPIIKSPD-SIHQPPQT*HPFPS 612
+PL PP P D + NP++ PD + QP +T + P+
Sbjct: 212 APLSGPPPQPGDIVFSNPMLGGPDHKVSQPSETENFLPT 250
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 98 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 226
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = -1
Query: 731 AVSPLCIKPPXPCDXGYINPIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGL-KPPLS 555
A P I P P P++ S+HQPP P +P P + AP + + P
Sbjct: 504 AAQPSVITPSVPQPPAA--PVVPEAPSVHQPPAA-PVAPEVPSAPQ-RPAAPVVPEAPSV 559
Query: 554 SEAPSAYLTPSSLGMXKGVSPPYFQVNDE 468
+ P+ + P +L + + PP V E
Sbjct: 560 PQRPAVPVVPEALSVPQ---PPVAPVAPE 585
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 253 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 158
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -1
Query: 674 PIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 516
P +P S +PP + P PSIP P +P PP+ S+AP PSSL
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPP---IPSSL 171
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 352 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 173
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 172 LSASIQASLPSSEIYRQL 119
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 470 HHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKS 634
H S NK A P P ++ P A TP+ SS A GL E++ KS
Sbjct: 511 HTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKS 565
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -1
Query: 677 NPIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEA---PSAYLTPSSLGM 510
+P + SP + + P P P++P P +PPL S S Y T SS +
Sbjct: 137 DPFLTSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTSSTSL 195
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 468 ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 382
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 678 QPDHQ-IPRFHTPTTPDLTSIS 616
QP HQ FHTPT P T +S
Sbjct: 130 QPKHQEFHLFHTPTIPRTTQLS 151
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 491 GAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSGV 640
G + + CP T+G +EP++ A+TP+S G+ + GV
Sbjct: 81 GGRVVHDCPTTKGIGYFLEPILILCLF--AKTPTSLTLTGVTSSNEDIGV 128
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 328 LVTHKELALKVSSIIGTRVYVFDPSCY 248
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -3
Query: 699 PLRXRXHQP---DHQIPRFHTPTTPDLTSISINPPDAVLEGVRA 577
PL + H+P Q+P+F + D +S I+P A L +RA
Sbjct: 731 PLALQSHRPLGITSQVPKFEEGYSLDKSSHDIDPERAQLNKLRA 774
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 113 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 214
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,842
Number of Sequences: 5004
Number of extensions: 58713
Number of successful extensions: 168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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