Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_C12
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 35 0.064
12_02_1174 - 26696869-26698191 31 1.0
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.6
07_01_0268 + 1985618-1985665,1985799-1985968,1986151-1986157 29 5.6
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.6
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 29 5.6
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 28 7.4
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 28 9.7
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.7
>06_03_1310 + 29238644-29240260
Length = 538
Score = 35.1 bits (77), Expect = 0.064
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -1
Query: 707 PPXPCDXGYINPII--KSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAY 534
PP G P+ +SP H PP+ P P P +P P PP SE+P +
Sbjct: 366 PPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSS 423
Query: 533 LTPS-SLGMXKGVSPP 489
+ PS S G SPP
Sbjct: 424 MPPSTSPPSSHGASPP 439
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/81 (30%), Positives = 32/81 (39%)
Frame = -1
Query: 731 AVSPLCIKPPXPCDXGYINPIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSS 552
A+SP+ PP P + P + P QPP + P P P P P +KPP+
Sbjct: 118 ALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPP-PPPPPPPPPPPRPPSVKPPVVQ 176
Query: 551 EAPSAYLTPSSLGMXKGVSPP 489
P P SL PP
Sbjct: 177 PKPQ---PPPSLQPPSPPPPP 194
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 79 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 180
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 71 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 217
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>07_01_0268 + 1985618-1985665,1985799-1985968,1986151-1986157
Length = 74
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 601 VRGIDGNGC*VWGGWCMESGDLMIGLMXPXSQGXGG 708
VRG++ NG + GWC S ++ M P S G
Sbjct: 36 VRGVEVNGYLIPKGWCDRSTSMICSTMSPTSSTHEG 71
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 238 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 59
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 58 ILHSF 44
+LHSF
Sbjct: 1408 LLHSF 1412
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.7 bits (61), Expect = 5.6
Identities = 28/94 (29%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Frame = -1
Query: 764 GXPXXXXAXXLAVSPLCIKPPXPCDXGYINPIIKSPDSIHQPPQT*HPFPSIPLTPY*KE 585
G P A + P PP G + P P S+ P P P P P
Sbjct: 119 GIPGYPGAPNVPTMPQTGAPP-----GSMPPGSMPPGSM---PMQMAPLPRPPTLPPPTS 170
Query: 584 FAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 489
APG P S P+ Y T P G G PP
Sbjct: 171 GAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Frame = -1
Query: 722 PLCIKPPXPCDXGYINPIIKSPDSIHQ----PPQT*HPFPSIPLTPY*K--EFAPGLKPP 561
P + P P + Y ++ D+ HQ PP P P Y ++A +PP
Sbjct: 308 PTPLAPTIPQESYYPPSAVQPTDTTHQQYQAPPAPQSQAPPAPPQHYQTPPQYAQYSQPP 367
Query: 560 LSSEAPSAYLTPSSLGMXKGVSPPY 486
+S PS + PS + V+ PY
Sbjct: 368 PASANPSTAVPPSVHQQPEEVAAPY 392
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 717 MHQATLPLRXRXHQPDHQIPRFHTPTTPDLTSISINPP 604
M AT LR HQP+ Q H P+ P I+PP
Sbjct: 142 MMPATHTLRMLQHQPEPQPQLQHPPSPPHPKEECISPP 179
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 439 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 350
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,564
Number of Sequences: 37544
Number of extensions: 465477
Number of successful extensions: 1341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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