Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_C12
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    30   2.2  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    30   2.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   5.0  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   6.6  

>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -1

Query: 704 PXPCDXGYINPIIKSPDSIHQP--PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS-AY 534
           P P +  + +P   SP S   P  P   +P PS P   Y  E A  + PP   E PS  Y
Sbjct: 355 PAPQEPAHPSPSYPSP-SYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQPSGGY 413

Query: 533 LTPS 522
             PS
Sbjct: 414 DAPS 417


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = -1

Query: 722  PLCIKPPXPCDXGYINPIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAP 543
            P  +KPP       +  +  SP S+  PP    P P+  +           + P+++EAP
Sbjct: 1157 PNLVKPPP------VQVVAPSP-SVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAP 1209

Query: 542  SAYLTPSSLGMXKGVSPP 489
            +A   PS   + +G SPP
Sbjct: 1210 AAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = -1

Query: 722  PLCIKPPXPCDXGYINPIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAP 543
            P  +KPP       +  +  SP S+  PP    P P+  +           + P+++EAP
Sbjct: 1157 PNLVKPPP------VQVVAPSP-SVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAP 1209

Query: 542  SAYLTPSSLGMXKGVSPP 489
            +A   PS   + +G SPP
Sbjct: 1210 AAAAAPSRARVPRGPSPP 1227


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
 Frame = -1

Query: 707 PPXPCDXGYINPIIKSPDSIHQPPQT*HP-----FPSIPLTPY*KEFAPGLKPPLSSEAP 543
           PP P    Y+    +   +   PP   +P      P+ P  PY +   P   PPL+S   
Sbjct: 30  PPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQ 89

Query: 542 SAYLTPS 522
           +A   P+
Sbjct: 90  NAVPVPA 96


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/67 (31%), Positives = 25/67 (37%)
 Frame = -1

Query: 722 PLCIKPPXPCDXGYINPIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAP 543
           P+C  PP PC      P I  P     PP    P P  P  P      P   PP+ S +P
Sbjct: 36  PMCAPPPLPCPP----PPICPPQFCPPPPMC--PPPPPPPPP---PMCPPPPPPMPSYSP 86

Query: 542 SAYLTPS 522
                P+
Sbjct: 87  CQSYAPA 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,136
Number of Sequences: 27780
Number of extensions: 342369
Number of successful extensions: 999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)