Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_C11
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 89 5e-19
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 28 1.3
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.0
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.0
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 5.3
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.3
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 7.0
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 89.4 bits (212), Expect = 5e-19
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = -2
Query: 607 RAGASRYAMALKDLCDKGVVDAYPPLCDIKGCYTAQFEHTILLRPTCKEVVSRGDDY 437
R G S+Y +AL +L G+V YPPLCDI+G YTAQFEHTI+L PT KEVVSRGDDY
Sbjct: 370 RIGESKYLLALNNLVSAGIVQDYPPLCDIRGSYTAQFEHTIILHPTQKEVVSRGDDY 426
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = -3
Query: 756 GQVHDEHGLLSLHENFDQQFVPLRLQSSKQLLNVINKNFGTLAFCKRWLDAPG 598
G VH++ + D +PLRL +K LLN I +NFGTL FC+R+LD G
Sbjct: 320 GVVHEDMECSHYAKIPDAGHIPLRLPRAKALLNTITQNFGTLPFCRRYLDRIG 372
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 776 TFGSTGRVKFTTNMDCSHYMK 714
TFGSTGR +M+CSHY K
Sbjct: 313 TFGSTGRGVVHEDMECSHYAK 333
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 366 TALTVVVKRLKDLQMFELF*YWKCSCNAFIT--CFGVV 259
T L +V +LKD ++ +L YW N FI C+ ++
Sbjct: 536 TELNAIVSQLKDERILKLQTYWSIGINLFILIGCYVII 573
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 464 LAGGSEQDGVFELCGVAPLDVAEGRV 541
L GSE+DG + G+ PL + +G++
Sbjct: 119 LPEGSEEDGHLKETGITPLSLQQGKI 144
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 538 PPLCDIKGCYTAQFEHTILLRPTCKEVVSR 449
P LCD++ T+Q E+ + CK++ R
Sbjct: 320 PYLCDVQAFLTSQLEYYFSIENLCKDMFLR 349
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Frame = -2
Query: 715 KLRSAICSVEIAIVETASERDQQELW---YTRVL----QALAGRAGASR---YAMALKDL 566
+L AI +E I + +R+++ W Y RVL L AG+SR + + +
Sbjct: 549 QLFPAIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVILAILISWAGSSRLDLFVSMVGSV 608
Query: 565 CDKGVVDAYPPLCDIKGC 512
C ++ YPP+ K C
Sbjct: 609 CCIPLIYMYPPMLHYKAC 626
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 532 LCDIKGCYTAQFEHTILLRPTCKEVVS 452
L DI GC TA T LL C EV+S
Sbjct: 1287 LQDIHGCLTAWARLTGLLVDDCNEVIS 1313
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 532 LCDIKGCYTAQFEHTILLRPTCKEVVSR 449
L +IKG +FE L + TC +VV R
Sbjct: 348 LVEIKGAVFKKFEKENLFQLTCSDVVER 375
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 89 PYQLTYTKIFWGNN*KSSPXRWLIAYLAYEHYSL 190
PY + YT +F+G++ +SP L+ + + Y L
Sbjct: 377 PYFIIYTLVFFGSSIANSPSVSLLTKVLHPKYHL 410
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 561 TRGWWTPTRPSATSRGATPHSSNTPSCSDPPARKSCPVAMTT 436
T G RPSA + GA P +++ P + + P+A T
Sbjct: 325 TNGRPVAPRPSAGAGGANPPAASQPGLLGGSSNSAGPIAAAT 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,572
Number of Sequences: 5004
Number of extensions: 60981
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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