Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_C11
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 534 PSATSRGATPHSSNTPSCSDPP 469
           P A  RG+ P+ S  P    PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 657 RSEAVSTIAISTEQIADRSFHVVRAVHVRRELDPSSGS 770
           R  AVST  +  E ++  S+H  + +  R EL   + S
Sbjct: 283 REFAVSTRILRDENLSQNSYHEFQILPERGELGHCTAS 320


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 524 HQGVLHRTVRTHHPAQTH 471
           H G LHR +R H   + H
Sbjct: 159 HSGKLHRHMRIHTGERPH 176


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 546 TPTRPSATSRGATPHSSNTPSCSDPP 469
           T T  + T+   TP+++   S + PP
Sbjct: 665 TTTTTTTTTTTTTPNTTQNASATTPP 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,567
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)