Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_C04
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0765 + 11000724-11002496 31 1.7
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 3.9
07_03_1751 - 29215074-29216270 29 3.9
01_01_0070 - 542603-542686,542803-543441 29 3.9
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 28 9.0
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 28 9.0
>03_02_0765 + 11000724-11002496
Length = 590
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = -2
Query: 745 GMXGXXXTXGXSXLGGXXLGXRXXGRXMGXGLGXXXVESGDRXGGXXXSXXXXAXGXXXL 566
G+ G G LGG G G G GLG G GG G
Sbjct: 321 GLGGGAGAGGGGGLGGGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGAGGGGGLGGGAGG 380
Query: 565 KXGXGXXXXXXXGGXVGXXSG 503
G G GG G G
Sbjct: 381 GGGLGGGAGGGLGGGAGAGGG 401
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = -2
Query: 745 GMXGXXXTXGXSXLGGXXLGXRXXGRXMGXGLGXXXVESGDRXGGXXXSXXXXAXGXXXL 566
G+ G G LGG G G G GLG G GG G
Sbjct: 361 GLGGGAGAGGGGGLGGGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGTGGGGGLGGGAGG 420
Query: 565 KXGXGXXXXXXXGGXVGXXSG 503
G G GG G G
Sbjct: 421 GGGLGGGAGGGLGGGAGAGGG 441
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = -2
Query: 724 TXGXSXLGGXXLGXRXXGRXMGXGLGXXXVESGDRXGGXXXSXXXXAXGXXXLKXGXGXX 545
T G LGG G G G GLG G GG G G G
Sbjct: 288 TGGGGGLGGGTGGGGGLGGGAGGGLGGGAGAGGGLGGGAGAGGGGGLGGGAGGGGGLGGG 347
Query: 544 XXXXXGGXVGXXSG 503
GG G G
Sbjct: 348 AGGGLGGGAGAGGG 361
Score = 28.7 bits (61), Expect = 6.8
Identities = 24/84 (28%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = -2
Query: 745 GMXGXXXTXGXSXLGGXXLGXRXXGRXMGXGLGXXXVESGDRXGGXXXSXXXXAXGXXXL 566
G+ G T G LGG G G G GLG G GG G
Sbjct: 401 GLGGGAGTGGGGGLGGGAGGGGGLGGGAGGGLGGGAGAGGGFGGGAGAGGGGGLGGGAGG 460
Query: 565 KXG--XGXXXXXXXGGXVGXXSGA 500
G G GG G +GA
Sbjct: 461 GGGLDGGAGGGAEAGGGFGGGAGA 484
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = -2
Query: 724 TXGXSXLGGXXLGXRXXGRXMGXGLGXXXVESGDRXGGXXXSXXXXAXGXXXLKXGXGXX 545
T G LGG G G G GLG G GG G G G
Sbjct: 486 TGGGGGLGGGAGGGGGLGGGAGGGLGGGAGAGGGFGGGKGGGFGGGLGGSSGSGFGGGFG 545
Query: 544 XXXXXGGXVGXXSG 503
GG G G
Sbjct: 546 AGGGAGGGAGAGFG 559
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Frame = +3
Query: 504 PLXXPTXPPQXXXXXXPXPXLSXXXPLAXXXXDXXXPPXRSPLSTXXXPRPXPIXRPXXL 683
P P+ P P P + P PP PL + P+P P P
Sbjct: 1146 PPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQP 1205
Query: 684 XPSXXPPNXLXP-XVXHXPXIP 746
P PP P + + P P
Sbjct: 1206 PPIPPPPVPSSPSSLGYQPPAP 1227
Score = 28.3 bits (60), Expect = 9.0
Identities = 25/90 (27%), Positives = 30/90 (33%)
Frame = +3
Query: 477 SLSXRDRXAPLXXPTXPPQXXXXXXPXPXLSXXXPLAXXXXDXXXPPXRSPLSTXXXPRP 656
+L+ ++ PL P PP P P L P PP + PL P
Sbjct: 1115 ALADQNELPPL--PDGPPPLPLDAPPPPPLPEGPP----PLPSDSPPCQPPLPPSPPPAT 1168
Query: 657 XPIXRPXXLXPSXXPPNXLXPXVXHXPXIP 746
P P L PS PP P P P
Sbjct: 1169 PP--PPPPLSPSLPPPPPPPPLPSGPPPQP 1196
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/69 (27%), Positives = 23/69 (33%)
Frame = -2
Query: 706 LGGXXLGXRXXGRXMGXGLGXXXVESGDRXGGXXXSXXXXAXGXXXLKXGXGXXXXXXXG 527
+GG G + G G G+G G GG G L G G G
Sbjct: 83 IGGGFGGGKGGGLGGGVGVGGGIGHGGGVGGGFGGGKGGGLGGGGGLGGGGGGGAGGGLG 142
Query: 526 GXVGXXSGA 500
G G +GA
Sbjct: 143 GGAGGGAGA 151
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/73 (24%), Positives = 22/73 (30%)
Frame = +3
Query: 501 APLXXPTXPPQXXXXXXPXPXLSXXXPLAXXXXDXXXPPXRSPLSTXXXPRPXPIXRPXX 680
AP PT P P ++ P PP P T P P+ P
Sbjct: 56 APTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPA 115
Query: 681 LXPSXXPPNXLXP 719
P PP+ P
Sbjct: 116 TPPPALPPSTPPP 128
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/85 (24%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Frame = +3
Query: 504 PLXXPTXPPQXXXXXX-PXPXLSXXXPLAXXXXDXXXP---PXRSPLSTXXXPRPXPIXR 671
P PT P + P P + P+A P P P T P P+
Sbjct: 38 PTPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTP 97
Query: 672 PXXLXPSXXPPNXLXPXVXHXPXIP 746
P P PP P P +P
Sbjct: 98 PPVTPPPVTPPPVSPPPATPPPALP 122
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.3 bits (60), Expect = 9.0
Identities = 26/109 (23%), Positives = 31/109 (28%)
Frame = +3
Query: 504 PLXXPTXPPQXXXXXXPXPXLSXXXPLAXXXXDXXXPPXRSPLSTXXXPRPXPIXRPXXL 683
P T PP P P P A PP P + P P P +
Sbjct: 33 PSLPTTTPPAPTVVAPPLPTTP---PPAVVAPSPPLPPLTPPPAIVPPALPPPPPLPAIV 89
Query: 684 XPSXXPPNXLXPXVXHXPXIPXLXXXXXHSLXATXXXALXSAXXAXPLS 830
P PP P + P +P + SL T L P S
Sbjct: 90 VPPALPPT---PAIAVPPALPPIPAIVPPSLPPTPEANLPCVAELAPCS 135
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +3
Query: 612 PPXRSPLSTXXXPRPXPIXRPXXLXPSXXPPNXLXPXVXHXPXIP 746
PP RSP P P P +P L P + P H P P
Sbjct: 429 PPLRSP-PRQPTPPPSPSQQPPLLAPQPVQASPTSPAKQHAPPAP 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,348
Number of Sequences: 37544
Number of extensions: 130368
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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