Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_C01
(792 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 180 5e-44
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther... 121 2e-26
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 67 4e-10
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 67 5e-10
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 62 2e-08
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 60 8e-08
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct... 54 4e-06
UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; ... 51 3e-05
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 51 4e-05
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|... 49 1e-04
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei... 46 8e-04
UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup... 44 0.003
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 44 0.004
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb... 40 0.072
UniRef50_A7PL06 Cluster: Chromosome chr7 scaffold_20, whole geno... 36 0.88
UniRef50_UPI00004DAE67 Cluster: Class B basic helix-loop-helix p... 34 3.6
UniRef50_Q4SIK3 Cluster: Chromosome 5 SCAF14581, whole genome sh... 34 3.6
UniRef50_P38321 Cluster: Uncharacterized protein YBR225W; n=2; S... 34 3.6
UniRef50_UPI0000F2DD3E Cluster: PREDICTED: similar to Ngfr prote... 34 4.7
UniRef50_UPI0000587F4D Cluster: PREDICTED: similar to endonuclea... 34 4.7
UniRef50_UPI000058732A Cluster: PREDICTED: similar to endonuclea... 34 4.7
UniRef50_Q4S3S0 Cluster: Chromosome 17 SCAF14747, whole genome s... 34 4.7
UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-direct... 33 6.2
UniRef50_A5KUR9 Cluster: VCBS repeat protein; n=1; Vibrionales b... 33 6.2
UniRef50_A0YVP1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
protein; n=9; cellular organisms|Rep: Endonuclease and
reverse transcriptase-like protein - Bombyx mori (Silk
moth)
Length = 960
Score = 180 bits (437), Expect = 5e-44
Identities = 82/123 (66%), Positives = 100/123 (81%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
YKT IRPVMTYASVVFAHAAR H+ + Q +QSRFCR+AVGAPWFVRNVDLHDDL LESI
Sbjct: 814 YKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIR 873
Query: 464 RYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLGT 285
++++S S R+FDKA RH+N LIVAA +Y P+P S RRRP+HV++DP DP+T+ L T
Sbjct: 874 KHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDT 933
Query: 284 SST 276
S+
Sbjct: 934 FSS 936
>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
mylitta|Rep: Reverse transcriptase-like - Antheraea
mylitta (Tasar silkworm)
Length = 186
Score = 121 bits (291), Expect = 2e-26
Identities = 53/117 (45%), Positives = 78/117 (66%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
YKT IRPV+TY+ VFAH ++ + Q+ Q+R R G PW++R VDLH +L++ SI
Sbjct: 25 YKTCIRPVITYSCPVFAHMSKDNFHKLQVFQNRVLRKVTGTPWYIRRVDLHRNLEIPSIW 84
Query: 464 RYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVL 294
Y++S ++ +F+KAA H +PL+V+A NY P P RRRP+H+ DPPD +T +
Sbjct: 85 TYVKSLTISYFEKAANHPSPLVVSAANYQPVP--NAARPRRRPRHIFIDPPDEITAV 139
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/111 (33%), Positives = 55/111 (49%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
YK + P Y ++ A H+K Q IQ++ R+ G WFVRN LH DL L ++
Sbjct: 795 YKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVF 854
Query: 464 RYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPP 312
+ S R+ D+ RH N L A P R+ +RR+P+ +I+ P
Sbjct: 855 DEINKHSSRYHDRLERHRNRLASALNR--SRPPRRL--NRRQPRDLITRSP 901
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 66.9 bits (156), Expect = 5e-10
Identities = 27/81 (33%), Positives = 48/81 (59%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
Y + ++P+ TY S ++ +A+R ++ Q QSR RI GAPW++RN ++H DL ++ +
Sbjct: 786 YNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVI 845
Query: 464 RYLQSASMRHFDKAARHENPL 402
+ ++ +K H NPL
Sbjct: 846 EVIAEKKTKYNEKLTTHTNPL 866
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 62.1 bits (144), Expect = 2e-08
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
YK+ + P + Y V+ AA+ HL +I+Q++ R GAPW++R D+ DL + +
Sbjct: 800 YKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLG 859
Query: 464 RYLQSASMRHFDKAARHENPLIVAAGNYIPDPAD-RMESSRRRPKHVISDPPD 309
LQ+ + ++ ++ H N L G AD R RR +H D P+
Sbjct: 860 DKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRHHPHDLPN 912
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 59.7 bits (138), Expect = 8e-08
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHA-ARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESI 468
YK+ IRP MTYASV +A A + + Q Q++F R A APWFVRN LH ++ + ++
Sbjct: 1267 YKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREVKMPTM 1326
Query: 467 SRYLQSAS 444
+ + +
Sbjct: 1327 EEFFRETA 1334
>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 494
Score = 54.0 bits (124), Expect = 4e-06
Identities = 23/88 (26%), Positives = 46/88 (52%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
Y + +RP+++YAS + AA +L +Q++ R APWF+RN +L DL + ++
Sbjct: 390 YLSTLRPILSYASPCWGSAASSNLSHILTVQNKIIRQISNAPWFIRNKNLEKDLKIPNLK 449
Query: 464 RYLQSASMRHFDKAARHENPLIVAAGNY 381
+++ + ++ NP + +Y
Sbjct: 450 DFIKKLNQDFANRTGTSNNPSLTYTIDY 477
>UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein;
n=80; Culicimorpha|Rep: Reverse transcriptase homolog
protein - Chironomus thummi
Length = 883
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESI 468
YK IRP+ TY F A+ HL+ Q++Q++F RI + + R DLH + + SI
Sbjct: 803 YKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLNKTRYERITDLHTEAKIPSI 861
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 50.8 bits (116), Expect = 4e-05
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
Y + P+ Y ++ AA+ + Q++Q+R R P++VR LH DL+L ++
Sbjct: 801 YVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVE 860
Query: 464 RYLQSASMRHFDKAARHENPL 402
+ + R+ D+ RH + L
Sbjct: 861 EQISRHTSRYSDRLRRHHSIL 881
>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
Length = 191
Score = 49.2 bits (112), Expect = 1e-04
Identities = 37/89 (41%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -2
Query: 371 PADRMESSRRRPKHVISDPPDPLTVLLGTSSTGH-XXXXXXXXXXXXXRVN*LSDTAH*V 195
P D SRR P HV+SDP D L+VLL SSTG+ + L+ ++
Sbjct: 26 PRDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGYCPCRVRRATNPKTQPMKFLAGSSQ-- 83
Query: 194 SRRIFSVGRVSDXGGRFCEARLLLGFVLA 108
S R S GRFCEA LLLG VLA
Sbjct: 84 SSRFRS-------DGRFCEALLLLGLVLA 105
>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
polyprotein - Nasonia vitripennis
Length = 1249
Score = 46.4 bits (105), Expect = 8e-04
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
+ IR + TYA V+ A HLK + R R + PW++RN + ++ + S +
Sbjct: 1122 FSAIIRSIQTYAIPVWGAAGESHLKPIEGSFFRMLRSILDIPWYIRNKQILKEVAITSPN 1181
Query: 464 RYLQSASMRHFDKAARHENPLIVAAGNY 381
+ + + D H NP IVA Y
Sbjct: 1182 QAAPIFAAKLHDSMKNHCNPTIVATTTY 1209
>UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup|Rep:
Pol protein - Drosophila melanogaster (Fruit fly)
Length = 1103
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAH-AARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESI 468
+K + P+ YA ++ + K Q +++++ R + A + R D+ +++S
Sbjct: 858 WKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSF 917
Query: 467 SRYLQSASMRHFDKAARHENPLI--VAAGNYIPDPADRMESSRRR 339
AS R+ + HENPLI + Y P +R+E S+ R
Sbjct: 918 DEIFDKASQRYANSLTDHENPLIYDLLINAYKP---NRLELSKNR 959
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep: ORF1
- Drosophila melanogaster (Fruit fly)
Length = 884
Score = 44.0 bits (99), Expect = 0.004
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS 465
+KT P++ Y S V+ A+ H+K QI Q++ ++ + P++ LH ++ +
Sbjct: 820 FKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQ 879
Query: 464 RYLQ 453
+ +Q
Sbjct: 880 QKIQ 883
>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
mori (Silk moth)
Length = 782
Score = 39.9 bits (89), Expect = 0.072
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = -1
Query: 252 SLATKGSTSKLTLRHSPLSFSPDLLSGSRFR 160
SL T G +++ R PLSFSPDLLSGSRFR
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFR 410
>UniRef50_A7PL06 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=8; Vitis vinifera|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 507
Score = 36.3 bits (80), Expect = 0.88
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -2
Query: 626 PVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISRYLQSA 447
P++ VF H RIH + I++ C V PWF N+DL D ++ Y+ S+
Sbjct: 33 PLLGMFPSVFLHLHRIHDRVTDILEKSGCTFLVKGPWFC-NMDLLVTTDPANV-HYIMSS 90
Query: 446 SMRHFDKAA 420
+F K +
Sbjct: 91 HFSNFPKGS 99
>UniRef50_UPI00004DAE67 Cluster: Class B basic helix-loop-helix
protein 4 (bHLHB4).; n=1; Xenopus tropicalis|Rep: Class
B basic helix-loop-helix protein 4 (bHLHB4). - Xenopus
tropicalis
Length = 195
Score = 34.3 bits (75), Expect = 3.6
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -2
Query: 554 QSRFCRIAVGAPWFVRNVDLHDDLD-LESISRYLQSASMRHFDKAARHENPLIVAAGNYI 378
+ R R+++ A R DL+D LD L S+ Y S S+R K A ++ A NYI
Sbjct: 86 ERRSLRLSINARERRRMHDLNDALDGLRSVIPYAHSPSVRKLSKIAT-----LLLAKNYI 140
Query: 377 PDPADRMESSRRRPKHVISDPP 312
A +E RR ++ PP
Sbjct: 141 LMQAQALEEMRRLVAYLNQGPP 162
>UniRef50_Q4SIK3 Cluster: Chromosome 5 SCAF14581, whole genome
shotgun sequence; n=3; Clupeocephala|Rep: Chromosome 5
SCAF14581, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 156
Score = 34.3 bits (75), Expect = 3.6
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -2
Query: 500 DLHDDLDLESISRYLQSASMRHFDKAARHENPLIVAAGNYIPDPA----DRMESSRRRPK 333
+L D D E + S H + A P I+A G Y+ P+ ++E R R
Sbjct: 81 ELTDMSDQELAEVFADSDEEAHSESPAGSYQP-IIARGGYMRSPSWTRCSKVEPPRERKH 139
Query: 332 HVISDPPDPLTVL 294
H SD PDPL L
Sbjct: 140 HSDSDTPDPLMKL 152
>UniRef50_P38321 Cluster: Uncharacterized protein YBR225W; n=2;
Saccharomyces cerevisiae|Rep: Uncharacterized protein
YBR225W - Saccharomyces cerevisiae (Baker's yeast)
Length = 900
Score = 34.3 bits (75), Expect = 3.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 419 RHENPLIVAAGNYIPDPA---DRMESSRRRPKHVISDPPDPLTVLL 291
+H NP I N I DP +++ P+ VISDP D + +LL
Sbjct: 357 QHSNPTISTTSNKISDPTLYIQQLDIEANSPRPVISDPLDEIDILL 402
>UniRef50_UPI0000F2DD3E Cluster: PREDICTED: similar to Ngfr protein;
n=1; Monodelphis domestica|Rep: PREDICTED: similar to
Ngfr protein - Monodelphis domestica
Length = 449
Score = 33.9 bits (74), Expect = 4.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Frame = +2
Query: 353 FPFCPQDRECSYRRPR*EGSRVV-------PLYRSGAWTPT 454
FP+C Q R C PR +GSR + P SGAW P+
Sbjct: 19 FPYCAQQRTCGLLEPRLQGSRCLENEPSSEPRRASGAWHPS 59
>UniRef50_UPI0000587F4D Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 405
Score = 33.9 bits (74), Expect = 4.7
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 537
Y T ++P+M YAS+++ + ++K +++Q R+ R
Sbjct: 257 YNTLLQPIMEYASIIWDPHTQANIKKLEMVQRRYVR 292
>UniRef50_UPI000058732A Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase, partial; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 242
Score = 33.9 bits (74), Expect = 4.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 537
Y T ++P+M YAS+ + + ++K +++Q R+ R
Sbjct: 132 YNTLLQPIMEYASITWDPRTQANIKKLEVVQRRYVR 167
>UniRef50_Q4S3S0 Cluster: Chromosome 17 SCAF14747, whole genome
shotgun sequence; n=3; Bilateria|Rep: Chromosome 17
SCAF14747, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 595
Score = 33.9 bits (74), Expect = 4.7
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 309 IRRIRDDVFRATSTAFHSVRRIGNVVTGGHDERVLVSCR-FIEVAHGRRLQIP 464
+R++ +V R T T FH VT G E +L++C+ + ++A+ R ++ P
Sbjct: 180 VRKMEAEVVRMTCTLFHGGPNSCGTVTSGGTESILMACKAYRDMAYERGIKYP 232
>UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 421
Score = 33.5 bits (73), Expect = 6.2
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 644 YKTXIRPVMTYASVVFAHAA-RIHLKSFQIIQSRFCRIA 531
YK+ IRP MTYA V +A A + + Q Q++F R A
Sbjct: 358 YKSVIRPTMTYAPVAWAFAPYKTRMHKLQTFQNKFLRQA 396
>UniRef50_A5KUR9 Cluster: VCBS repeat protein; n=1; Vibrionales
bacterium SWAT-3|Rep: VCBS repeat protein - Vibrionales
bacterium SWAT-3
Length = 4022
Score = 33.5 bits (73), Expect = 6.2
Identities = 25/78 (32%), Positives = 34/78 (43%)
Frame = -2
Query: 515 FVRNVDLHDDLDLESISRYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRP 336
F + D HD + + + + S+ H D LI A G IP A + +
Sbjct: 1709 FTHSTDGHDKWSYSADNSHAEVQSLSHGDSLT-DTITLITADGTRIPLTAKILGTD---- 1763
Query: 335 KHVISDPPDPLTVLLGTS 282
HVI D PD LT LGT+
Sbjct: 1764 DHVIIDTPDALTAALGTA 1781
>UniRef50_A0YVP1 Cluster: Putative uncharacterized protein; n=1;
Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
protein - Lyngbya sp. PCC 8106
Length = 1857
Score = 33.5 bits (73), Expect = 6.2
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = -2
Query: 515 FVRNVDLHDDLDLESISRYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRP 336
F+ ++DL D D++S S+ + N L++AA P DR
Sbjct: 1520 FLNSLDLKQDNDVDS-----SSSRWADINTGEVSGNVLVIAASTSDVTPEDRFNIKNLEV 1574
Query: 335 KHVISDPPDPLTVLLGT 285
+ V ++PP+P V+ GT
Sbjct: 1575 QQVATEPPNPGNVINGT 1591
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,368,557
Number of Sequences: 1657284
Number of extensions: 12373434
Number of successful extensions: 32507
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 31181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32498
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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