Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_B10
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    33   0.050
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   5.7  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   7.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   7.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   10.0 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   10.0 

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = -2

Query: 478 FSQISGPKVSFATPYDAFVAIWDREIMESIVEETNIYAQQLATVMLETGTIRPHSWITRW 299
           F  + G KVSF    D    I  + ++E  +++  +Y  QL+   L +     HSW  ++
Sbjct: 90  FYAMHGYKVSFRPGTD-HAGIATQSVVEKYLQKKGVYRNQLSKDELLSSI---HSWQVKY 145

Query: 298 QDTDVNELYTYFAI 257
           Q + +N+L ++ AI
Sbjct: 146 QKSIINQLKSFEAI 159


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 188 KYVLCRAPILGQAAFDEH 241
           ++V+C  P +G A FD H
Sbjct: 100 RHVVCAGPFVGHAVFDNH 117


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 298 QDTDVNELYTYFAIILAMGVFIKSCLTEYWCTAQDV 191
           QD  + ELY+ +A+ + + + I + LT Y+  ++ +
Sbjct: 24  QDPALQELYSSWALFILLVLLIGALLTSYYVQSKKI 59


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 217 EYWCTAQDVFYTPGFSAQMSYDRFRLLSRCLHFSN 113
           E + T    F T GF  + ++D F +LS  LH  N
Sbjct: 312 EEFKTLLAAFKTLGFDDKENFDLFNILSIILHMGN 346


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 69   LTWRRVNIARSQAVLLEKCRHLDSSRK 149
            L  +R ++  S A+LLEKC+ L  +R+
Sbjct: 987  LVQKRADLLHSAAILLEKCKLLVYNRQ 1013


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 359 LLCVNVGFLDYRFHYFTIPYGNECIIRSRERNLWTTNLGE-RFSP*IRFDCRHWRRSP 529
           LL  N  FLD     FT+    +   R R +N+W +  G   FS  I  D +++  +P
Sbjct: 368 LLDKNYRFLDSTNTGFTVLGNYQTAGRGRGQNMWVSPYGTLAFSFIINVDAKNFSTTP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,000
Number of Sequences: 5004
Number of extensions: 56174
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)