Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_B08
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
            protein Y18H1A.3 protein.
          Length = 1258

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 699  TSSAYIDLPPYTPTAHLRQWGGVVTTFWKVPLI 797
            +S+A+  LP +TP A L +W  +  +   VPL+
Sbjct: 990  SSAAHDHLPAFTPNAKLLEWRSLSASLGFVPLV 1022


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 313 SSDRLRRPRSTGPGXARITVFGCNFVMLDTLSLINIICPPTYQ**RIRASTMDITQCSRN 492
           S  R R  RS       +T  GC+        + NI+C   +   ++   T +  Q   N
Sbjct: 518 SDSRKRISRSFSASSLMLTCIGCDSEFKPASQVTNIMCDQCFAWQKMSVLTSNCDQFMGN 577

Query: 493 SGP 501
           SGP
Sbjct: 578 SGP 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,732,017
Number of Sequences: 27780
Number of extensions: 445006
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)