Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_B06
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   2.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.0  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    26   7.1  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   9.4  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.4  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 255 NSARDRYTVPWGFNGFINYI 314
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 759 VXAGSGSTLHRVSEHPFHSCILHLFPARFHISPXPVQP 646
           V + +  T+ ++ EHPF SC +H       I   P+QP
Sbjct: 245 VDSSTRITMEQIREHPFLSCFVHP-NISIPIISAPIQP 281


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 454 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 362
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -1

Query: 774 TRXGMVXAGSGSTLHRVSEHPFHSCILHLFPARFHISPXPVQPCCC-GCSASRDVNLYIF 598
           T   ++ A    TL   +   F SC++  FPAR      P+      GC+    + +Y F
Sbjct: 110 TSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKKLSPLMHWILRGCTVLTLIGVYEF 169

Query: 597 TKN 589
             N
Sbjct: 170 NTN 172


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 254 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 171
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 428 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 520
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,170
Number of Sequences: 5004
Number of extensions: 57589
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)