Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_B01
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    77   3e-15

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 39/102 (38%), Positives = 49/102 (48%)
 Frame = -2

Query: 621 SEATLXNMLNISPFSYGLVVKQVYDXGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAI 442
           SEATL NMLNISPF+YG+ V  +YD G +F+PEI D+  ED                   
Sbjct: 168 SEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGA 227

Query: 441 GYPXIXSAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKD 316
            YP I S  HS+ N +KNL+                K F+ D
Sbjct: 228 NYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLAD 269



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 725 TFFXQXXFIPTXISKGTXGIIXDVHI 648
           T F Q   IPT I++GT  I  DVH+
Sbjct: 133 TSFFQALGIPTKITRGTIEITSDVHL 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,289
Number of Sequences: 5004
Number of extensions: 25084
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)