Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_B01
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...    83   2e-16
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...    83   2e-16
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...    82   6e-16

>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/103 (40%), Positives = 55/103 (53%)
 Frame = -2

Query: 624 ASEATLXNMLNISPFSYGLVVKQVYDXGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXA 445
           +SE+ L   L I PFSYGLV+  VYD G++F+PE+ D+  ED   KF            A
Sbjct: 172 SSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLA 231

Query: 444 IGYPXIXSAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKD 316
           I YP I +APH   NG+KN+L               IKE++KD
Sbjct: 232 ISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKD 274



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -3

Query: 725 TFFXQXXFIPTXISKGTXGIIXDVHIXKPGDK 630
           T F Q   IPT I+KGT  II  V + K GDK
Sbjct: 138 TSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/103 (40%), Positives = 55/103 (53%)
 Frame = -2

Query: 624 ASEATLXNMLNISPFSYGLVVKQVYDXGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXA 445
           +SE+ L   L I PFSYGLV+  VYD G++F+PE+ D+  ED   KF            A
Sbjct: 172 SSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLA 231

Query: 444 IGYPXIXSAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKD 316
           I YP I +APH   NG+KN+L               IKE++KD
Sbjct: 232 ISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKD 274



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -3

Query: 725 TFFXQXXFIPTXISKGTXGIIXDVHIXKPGDK 630
           T F Q   IPT I+KGT  II  V + K GDK
Sbjct: 138 TSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169


>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 41/103 (39%), Positives = 55/103 (53%)
 Frame = -2

Query: 624 ASEATLXNMLNISPFSYGLVVKQVYDXGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXA 445
           +SE+ L   L I PFSYGLV+  VYD G++F+PE+ D+  +D   KF            A
Sbjct: 172 SSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLA 231

Query: 444 IGYPXIXSAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKD 316
           I YP I +APH   NG+KN+L               IKE++KD
Sbjct: 232 ISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKD 274



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -3

Query: 725 TFFXQXXFIPTXISKGTXGIIXDVHIXKPGDK 630
           T F Q   IPT I+KGT  II  V + K GDK
Sbjct: 138 TSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,879
Number of Sequences: 37544
Number of extensions: 185646
Number of successful extensions: 274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)