Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P24
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 248 8e-67
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 244 9e-66
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 46 5e-06
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.1
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 27 2.5
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 7.6
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 248 bits (607), Expect = 8e-67
Identities = 117/176 (66%), Positives = 139/176 (78%)
Frame = +2
Query: 122 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 301
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 302 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 481
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 482 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 649
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREV
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREV 185
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 244 bits (598), Expect = 9e-66
Identities = 113/180 (62%), Positives = 141/180 (78%)
Frame = +2
Query: 110 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 289
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 290 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 469
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 470 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 649
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 46.4 bits (105), Expect = 5e-06
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Frame = +2
Query: 155 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 328
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 329 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 445
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 446 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 613
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 614 IGLMWWLLAR 643
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 245 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 421
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 380 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 544
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 545 CNTDSPLRFVDIAIPCNTKSSHSI 616
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 626 WWLLAREVFEGLSXGGXXSPPG 691
WWL + VF GL GG S G
Sbjct: 349 WWLRSGSVFRGLQFGGVQSISG 370
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 508 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 329
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 328 EHISGVLDG 302
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 663 EXPSNTSRANNHHIKPIEWEDLVLHGIAMS 574
E PSN+ A+ ++ EW D L+G+ S
Sbjct: 35 ESPSNSGVASKRKLQSTEWLDPELYGLRRS 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,474
Number of Sequences: 5004
Number of extensions: 79301
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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