Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P22
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    93   6e-20
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    30   0.35 
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   10.0 

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +2

Query: 101 WQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFT 280
           WQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ KVRAGRGFT
Sbjct: 18  WQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGFT 76

Query: 281 LREIRAAGLNPVFARTIGIAVDPR 352
           L E++AAG++   A TIGI VD R
Sbjct: 77  LEELKAAGVSRRVASTIGIPVDHR 100



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 360 NKSVESLQINVQRIKEYRARLILFPK 437
           N+S ESLQ NV+RIK Y A LI+FP+
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPR 128


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
 Frame = -3

Query: 451  LSFLPFGNSIRRALYSFIL*TLICNDSTDLLRLXGI------YS-NSNRSGKYWVQSCGP 293
            +S  P GN++  A   F   + +   S   L++ G+      YS NS         S   
Sbjct: 1153 ISVTPKGNNMYDATVQFTTSSTMSKKSLSELKILGLSQTYLLYSYNSKVDNISNPGSWTS 1212

Query: 292  NFTKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 167
              T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1213 TVTVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 274 IHSS*N*GRRIEPSICPNDWNCCRSPXDATSLLNHCKSMFKE 399
           +H S N G  ++P +  N WN      D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,113
Number of Sequences: 5004
Number of extensions: 50550
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)