Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P22
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 97 2e-20
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 95 5e-20
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 31 1.5
02_05_0092 + 25749070-25750638 30 2.0
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 2.0
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 30 2.6
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 6.0
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 6.0
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 7.9
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445 28 7.9
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 96.7 bits (230), Expect = 2e-20
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +2
Query: 95 RYWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 274
++WQ +VKTWFNQPAR+ RR+ R LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 275 FTLREIRAAGLNPVFARTIGIAVDPR 352
FTL E++AAG+ FA TIGI+VD R
Sbjct: 75 FTLEELKAAGIPKKFAPTIGISVDHR 100
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/32 (53%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Frame = +3
Query: 360 NKSVESLQINVQRIKEYRARLILFP-KGKKLK 452
N+S+E LQ NVQR+K Y+A+L++FP + +K+K
Sbjct: 103 NRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 95.5 bits (227), Expect = 5e-20
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = +2
Query: 95 RYWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 274
++WQ +VKTWFNQPAR+ RR+ R LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 275 FTLREIRAAGLNPVFARTIGIAVDPR 352
FTL E++AAG+ +A TIGI+VD R
Sbjct: 75 FTLEELKAAGIPKKYAPTIGISVDHR 100
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/32 (53%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Frame = +3
Query: 360 NKSVESLQINVQRIKEYRARLILFP-KGKKLK 452
N+S+E LQ NVQR+K Y+A+L++FP + +K+K
Sbjct: 103 NRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 389 CSKNKGIQSASYTVPERQKAQTFPAHN---ELHAAQRRPPISQTCRGQNQERGGEKEKNG 559
C+ NKG S + K PAH+ + ++ PP T RG+ + G + G
Sbjct: 1691 CTDNKGTASIAVLEGSNAKEVGIPAHSVHEPVSSSAPHPPTPATSRGRKTQAGETPRRRG 1750
Query: 560 R 562
R
Sbjct: 1751 R 1751
>02_05_0092 + 25749070-25750638
Length = 522
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +2
Query: 347 PR*TQQVC*IIANQCSKNKGIQSASYTVPERQKAQTFPAHNELHAAQRRPPISQTCRGQN 526
P T V + S N + +P A A +HA + P ++ + +
Sbjct: 107 PAVTPSVAPVYIQMPSANPAVAPVQIQMPSETAASVPAAPVPVHAPSQPPVVAIAVKKEQ 166
Query: 527 QERGGEKEKNGRDSQIEG 580
E+ E+E NGRD +G
Sbjct: 167 NEKD-EEEDNGRDDDDDG 183
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 428 VPERQKAQTFPAHNELHAAQRRPPISQTCRG-QNQERGGEKEKNGRDSQIEGSQT*RIAR 604
VP R +A AH E A R P + G ++ ER GE+++ D + + R AR
Sbjct: 6 VPVRPRAGRHRAHGEAPADDRGGPGDEDRGGHRHPERAGEEQERAEDDKRDEGDGERDAR 65
Query: 605 EN 610
E+
Sbjct: 66 ED 67
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 391 TLICNDSTDLLRLXGIYSN-SNRSGKYWVQSCG 296
TLI N +T+L RL GIY N N SG ++ G
Sbjct: 167 TLIANKNTELQRLVGIYKNILNNSGVTLIEGRG 199
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 347 DLQQFQSFGQILGSILRP 294
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 347 DLQQFQSFGQILGSILRP 294
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 129 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 299
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
Length = 352
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 244 PNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSSSWLVKPSF-NKSLPIPCGNVH*VSY 68
P W R + +S + L LL VS S + PS+ +++ N+ VSY
Sbjct: 152 PTRWPDFVPGYRDTVVKYSDSMKDLAQKLLRIVSESLNLPPSYIEEAVGEVYQNIT-VSY 210
Query: 67 YSPCP 53
YSPCP
Sbjct: 211 YSPCP 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,976
Number of Sequences: 37544
Number of extensions: 351138
Number of successful extensions: 895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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