Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P22
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   100   3e-21
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    79   5e-15
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      30   1.8  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 48/118 (40%), Positives = 70/118 (59%)
 Frame = +2

Query: 95  RYWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 274
           ++W + +KTWF+QPAR+ RR+QNR               LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 275 FTLREIRAAGLNPVFARTIGIAVDPR*TQQVC*IIANQCSKNKGIQSASYTVPERQKA 448
           F+L+E++AAG++   ARTIGIAVD R T +    +     + K  ++     P++  A
Sbjct: 76  FSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASA 133


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 34/72 (47%), Positives = 47/72 (65%)
 Frame = +2

Query: 95  RYWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 274
           ++W + +KTWF+QPAR+ RR+QNR               LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 275 FTLREIRAAGLN 310
           F+L+E++AA  N
Sbjct: 76  FSLQELKAAEEN 87


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 395 KNKGIQSASYTVPERQKAQTFPAHNELHAAQRRPPISQTCRGQNQERGGEKEKNGRDSQ 571
           KN G + +  T P+ Q A   PA N   A  R PP S   +G + E       NG +++
Sbjct: 57  KNWGNEFSIATAPKDQ-APAVPAGNSGSAWNRGPPSSLVAKGSSNESTPPPTTNGEEAE 114


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 395 KNKGIQSASYTVPERQKAQTFPAHNELHAAQRRPPISQTCRGQNQERGGEKEKNGRDSQ 571
           KN G + +  T P+ Q A   PA N   A  R PP S   +G + E       NG +++
Sbjct: 382 KNWGNEFSIATAPKDQ-APAVPAGNSGSAWNRGPPSSLVAKGSSNESTPPPTTNGEEAE 439


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 395 KNKGIQSASYTVPERQKAQTFPAHNELHAAQRRPPISQTCRGQNQERGGEKEKNGRDSQ 571
           KN G + +  T P+ Q A   PA N   A  R PP S   +G + E       NG +++
Sbjct: 382 KNWGNEFSIATAPKDQ-APAVPAGNSGSAWNRGPPSSLVAKGSSNESTPPPTTNGEEAE 439


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 195 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 106
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical
           protein F38B7.2b protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  YLMDISTRYWQRFVKTWFNQPARRYRRKQNR 166
           Y  DIST ++ RFVKT F + +  +   +N+
Sbjct: 29  YHADISTNFYPRFVKTVFAEESHNFDVIENK 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,706
Number of Sequences: 27780
Number of extensions: 291889
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)