Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P20
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.16 
11_06_0447 - 23710477-23710668,23711547-23712026                       30   2.0  
12_01_0524 - 4167867-4168445                                           29   3.5  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    29   3.5  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   4.6  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.1  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.0  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.0  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>11_06_0447 - 23710477-23710668,23711547-23712026
          Length = 223

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 484 IGVLMSKRFIQETEPLLDTTGAESVVPGGGCS 389
           +G   S  F++   P +DTTG E V  GGG S
Sbjct: 113 LGSGASAAFVRMVVPGVDTTGGEEVAAGGGAS 144


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
           QPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 160 CEERVDHEGQ*C 125
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 449 DGAVIRYHGRGERSPRRWLQPRLAVPRQASTSVPRTP-AKCCSPTP 315
           D  V+R+  R  R  RRWL      PR  ST   R    + C+ +P
Sbjct: 272 DADVLRWQDRMRRRGRRWLWAFAGAPRPGSTKTVRAQIIEQCTASP 317


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 455 PGDGAVIRYHGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 300
           P D    R   R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 213 PRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 76  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,817,228
Number of Sequences: 37544
Number of extensions: 535940
Number of successful extensions: 1759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)