Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P10
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 35 0.069
10_08_0779 - 20497718-20498773 35 0.091
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 34 0.16
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 33 0.37
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 32 0.64
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524... 31 0.85
12_01_0630 - 5203802-5204111,5204896-5204900 29 4.5
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 6.0
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 6.0
12_02_0373 + 18245137-18245360,18245579-18245684 28 7.9
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 28 7.9
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764... 28 7.9
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 35.1 bits (77), Expect = 0.069
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 302 REFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDD 403
R ++RRSG TG KREGAG NWGT+ D+
Sbjct: 158 RAYERRSG---TGRGYGMKREGAGRGNWGTVTDE 188
>10_08_0779 - 20497718-20498773
Length = 351
Score = 34.7 bits (76), Expect = 0.091
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 668 HLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHRVS 534
HL +P+ P +S HPH SS+ ++ + CV P +HRVS
Sbjct: 49 HLSPYLPSLPHLLLAASFHPHPISSSSSSSAASSSCV-PLLHRVS 92
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 293 RGKREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDD 403
R +R ++R SG TG KREG+G NWGT+ D+
Sbjct: 160 RPRRAYERHSG---TGRGYELKREGSGRGNWGTVTDE 193
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 287 DNRGKREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDDL 406
+ +R ++R SG TG KREG+G NWGT D++
Sbjct: 168 ERMSRRPYERHSG---TGRGYEMKREGSGRGNWGTTTDEI 204
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 299 KREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDD 403
+R ++R SG TG KR+GAG NWGT D+
Sbjct: 162 RRNYERHSG---TGRGYEMKRDGAGRGNWGTATDE 193
>04_04_0254 -
23951495-23951902,23952000-23952155,23952344-23952485,
23952772-23953160,23953833-23953948,23954290-23954371
Length = 430
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 695 RQFPNHHHGHLPSCVPTEPGFSTGSSL 615
R P HHHGHL S T GFS+ SL
Sbjct: 312 RHIPEHHHGHLKSVKIT--GFSSAKSL 336
>12_01_0630 - 5203802-5204111,5204896-5204900
Length = 104
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 377 GDLRPPSCRLISHRFCQSR 321
G LRPPSCR IS R+ R
Sbjct: 12 GTLRPPSCRAISRRYRSPR 30
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 662 PSCVPTEP--GFSTGSSLHPHLPSSNCTAERCVARCVKPCIHRVSTHAVLPQRA 507
P C+ T G S +S L S +AR + P IH +S LP++A
Sbjct: 56 PDCIETTTAHGESLSASKEYSLAESQFNRALSIARPLDPAIHNISYGVSLPEKA 109
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -2
Query: 680 HHHGHLPSCVPTEPGFSTGSSLHP--HLPS 597
HHH PS P EP + S HP H PS
Sbjct: 187 HHHAKPPSLPPAEPPVPSPSPEHPPRHSPS 216
>12_02_0373 + 18245137-18245360,18245579-18245684
Length = 109
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 426 PVLFNSSRSSLIVPQLWGPAPSLL 355
PV+ + ++ ++P+LWGP PSLL
Sbjct: 39 PVVMENDGAA-VLPRLWGPPPSLL 61
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 710 PDXIPRQFPNHHHGHLPSCVPTEP 639
P P +HHH H PS P+ P
Sbjct: 9 PPQTPPSLDHHHHHHTPSVGPSSP 32
>04_04_0256 +
23974297-23974387,23974824-23974942,23975619-23976437,
23976626-23976781,23976878-23977252
Length = 519
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 695 RQFPNHHHGHLPSCVPTEPGFSTGSSL 615
R P H HGHL S T GFS+ SL
Sbjct: 413 RHIPGHRHGHLKSVKIT--GFSSAKSL 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,576,467
Number of Sequences: 37544
Number of extensions: 334228
Number of successful extensions: 1188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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