Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P09
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.091
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 30 2.0
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 4.5
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296 29 6.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.0
08_02_1438 + 27108359-27108889 28 7.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 7.9
07_03_1136 + 24218601-24218734,24218769-24219906 28 7.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 7.9
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.7 bits (76), Expect = 0.091
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +1
Query: 412 PPXGGKXPPXPRXX*XXXPPPPXKXXGXXXPPFFXGEKKGXP 537
PP K PP P PPPP K PP G+K G P
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +1
Query: 403 GXAPPXGGKXPPXPRXX*XXXPPPPXKXXGXXXPPFFXGEKKGXPXKXKXPGXXXG 570
G PP K PP P PPPP G P K G PG G
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTG 398
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = -2
Query: 771 PXPPPXXXGGGXXPXXXXXEGXGXPXPPXXXXXPPXEXPXPPXXXK 634
P PPP P P P PP + P PP K
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPK 360
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Frame = +1
Query: 394 LXXGXAPPXGGKXPPXPRXX*XXXPPPPXKXXG----XXXPPFFXGEKKGXPXKXKXPGX 561
L PP PP P+ PPPP K G PP G K P PG
Sbjct: 579 LKASPVPPPEPSPPPAPKAA---PPPPPPKSTGPGPPRPPPPAMPGSSKTRPPPPLKPGA 635
Query: 562 XXG 570
G
Sbjct: 636 KVG 638
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Frame = -2
Query: 825 GGXHXXXXXKXXXPXXXXPXPPPXXXGGGXXPXXXXXEGXGX---PXPPXXXXXPPXEXP 655
GG + P P PPP G P G P PP PP P
Sbjct: 262 GGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIP 321
Query: 654 XPP 646
PP
Sbjct: 322 PPP 324
>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
Length = 191
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 698 GXPXPSXXXXXGXXPPPXXXGGGXGXXXXG 787
G P P+ G PPP GGG G G
Sbjct: 94 GAPPPAPYYGNGGYPPPHQRGGGGGGSGGG 123
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +1
Query: 421 GGKXPPXPRXX*XXXPPPPXKXXGXXXPPFFXGEKKGXPXKXKXPGXXXGXXXP 582
G PP P P PP G PP G G P PG P
Sbjct: 346 GSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPP 399
>08_02_1438 + 27108359-27108889
Length = 176
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 196 DSGGXSXIVRCEERVDHEGTVML 128
D GG VRC E VD +G V+L
Sbjct: 77 DGGGVREAVRCVEYVDDDGAVLL 99
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 403 GXAPPXGGKXPPXPRXX*XXXPPPPXKXXGXXXPP 507
G PP + PP P+ PPPP PP
Sbjct: 73 GPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPP 107
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 647 GGXGXSXGGXXXXXGGXGXPXPSXXXXXGXXPPPXXXGGGXGXXXXG 787
GG G + G GG G P + G P GGG G G
Sbjct: 163 GGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLG 209
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +1
Query: 421 GGKXPPXPRXX*XXXPPPPXKXXGXXXPPFFXGEKKGXPXKXKXPGXXXGXXXP 582
GG PP PPPP G PP G P PG G P
Sbjct: 1171 GGTPPPNAHGGVAPPPPPPRGHGGVGGPP----TPPGAPAPPMPPGVPGGPPPP 1220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,507,380
Number of Sequences: 37544
Number of extensions: 439799
Number of successful extensions: 1692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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