Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P07
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.36
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.36
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.82
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.9
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 4.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 26 7.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.6
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.36
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 215 VRVHRANTGRSSNELDRQTTELERR 289
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 619 PXRXPXPGPXPXGGXPPXPRXPXXPPRRXAPXXXXPXPAXXXG 747
P P P P P G PP P P P P PA G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.82
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Frame = +1
Query: 631 PXPGPXPXGGXPPXPRXPXXPPRRXAPXXXXPXPAXXXGXGVGXSXVPASXGGXPXAXG- 807
P G PP P P PP P+ G P++ P G
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 808 PQXPRVPPXXP 840
P P +PP P
Sbjct: 464 PAAPPLPPAAP 474
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = +1
Query: 637 PGPXPXGGXPPXPRXPXXPPRRXAPXXXXPXPAXXXGXGVGXSXVPASXGGXPXAXGPQ- 813
P P P PP P P P P P P G VPA P P
Sbjct: 1023 PVPLPSADAPPIP-VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 814 XPRVP 828
P VP
Sbjct: 1082 APPVP 1086
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/72 (30%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Frame = +1
Query: 637 PGPXPXGGXPPXPRXPXXPPRRXAPXXXXPXPAXXXG-----XGVGXSXVPASXGGXPXA 801
P P P PP P PP P PA V VPA G P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 802 XGPQ--XPRVPP 831
P P VPP
Sbjct: 1182 PKPAAGVPPVPP 1193
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 637 PGPXPXGGXPPXPRXPXXPPRRXAPXXXXPXPAXXXG 747
P P P G PP P+ P P P P G
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = +1
Query: 649 PXGGXPPXPRXPXXPPRRXAPXXXXPXPAXXXGXGVGXSXVPASXGGXPXAXGPQXP-RV 825
P PP P+ PP P P P+ + S P P P P +
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPI-PSKAPPIPSSLPPPAQPAAPVKS 183
Query: 826 PPXXP 840
PP P
Sbjct: 184 PPSAP 188
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 139 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 41
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 619 PXRXPXPGPXPXGGXPPXPRXPXXPP 696
P P P P P G PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 488 RWANCLPCIEXGVPNVQA---LYPGDGAVIRYTGAESVVPGGGCSR 360
+W P G+P+ LY A TG++ +V GG CSR
Sbjct: 210 KWKEYTPQARIGLPDELPGAYLYLASDASSYCTGSDIIVDGGYCSR 255
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 731 GXGXXXXGAXLRGGXXGXRGXGGXPPXGXGPG 636
G G G L G G G GG P GPG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,413
Number of Sequences: 5004
Number of extensions: 50661
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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