Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P06
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.46 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   7.4  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   7.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 214 VRVHRANTGRSSNELDRQTTELERR 288
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 138 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 34
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 392 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMH 526
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIH 629


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 20   MSTTYIILLPFLLTCAIASAAECENATSLS 109
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 20/62 (32%), Positives = 22/62 (35%)
 Frame = -2

Query: 547 EXHFVTXVHPRTELERASLHVVGPIV*LHRNWSANVQALYPGDGAVIRYTGAESVVPGGG 368
           E H    V   T      LH+ G        W A + A    DGAV  Y      V GGG
Sbjct: 108 EPHTADSVILATGASARRLHITGE----DTYWQAGISACAVCDGAVPIYRNKPLAVVGGG 163

Query: 367 CS 362
            S
Sbjct: 164 DS 165


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 217 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 110
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = +3

Query: 654 PPPWXPXPNXLXRXTAPXPRXXXXXXPVPXGXPRPAXRAGPXXXXXPXXP 803
           PPP  P P  +    AP P       P+  G P P    G      P  P
Sbjct: 732 PPP--PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,815
Number of Sequences: 5004
Number of extensions: 54231
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)