Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P06
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.16
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.6
12_01_0524 - 4167867-4168445 29 3.4
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 5.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.9
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 7.8
06_01_0145 + 1092764-1093351 28 7.8
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 7.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 316 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 152
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 369 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 521
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +3
Query: 654 PPPWXPXPNXLXRXTAPXPRXXXXXXPVPXGXPRPAXRAGPXXXXXPXXPXXAGXP 821
PPP P P P P+ P P G P P GP P P P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPP-PKGPPPPPPAKGPPPPPPPKGPSPPPPP 368
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 313 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 134
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 133 CEERVDHEGQ*C 98
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 214 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 330
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/75 (25%), Positives = 22/75 (29%)
Frame = +2
Query: 578 PXPGXWDVTALSIXXPXPXPXAXVAPSPLXAXPQXXXPXXRPXATXXXXXXPXPXXXXSX 757
P P + A S P P P P A Q P P P P
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPP 610
Query: 758 GXPGRALXXPXSXPP 802
P R++ P PP
Sbjct: 611 ILPNRSVPPPPPPPP 625
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 220 VHRANTGRSSNELDRQTTELERRGVG 297
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>06_01_0145 + 1092764-1093351
Length = 195
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -2
Query: 820 GXPAXXGXXGXXXXQGPARXAGRGXPXGTGXXXXXXRGXGAVXRXXXLGXGXQGGG 653
G G G GP GRG G G R G R G G GGG
Sbjct: 106 GPGGVGGKGGPGGDGGPGGIGGRGGDGGCGGVGGRGRKGGRGGRGGRGGSGGFGGG 161
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 49 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 189
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 398 GRGERSPRRWLQPRLAVPRQASTSVPRTP 312
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 395 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 273
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,138,080
Number of Sequences: 37544
Number of extensions: 532029
Number of successful extensions: 1779
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -