Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P03
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   1.4  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    28   1.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.7  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   9.7  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 23  VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPXLG 169
           +P REE S + P  +  V      + PS+K  G IS  K++  F    G
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFFFDDKG 153


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 640 YSPNPDHAGASHRRRPXXRPYGSIXSNNL 726
           Y+PNP+HA + H   P    Y S+ SN +
Sbjct: 77  YTPNPEHAVSPH-SGPAPPSYSSLASNGM 104


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 363 PKGHSTPLTDHGVESTENKRGTV 295
           P G +TP + H   ST  +RG+V
Sbjct: 150 PIGSTTPKSSHSPPSTRKRRGSV 172


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 238 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSRM 354
           LG++   +M +  H  ++ D+   +LGR+ P++C R  +
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSRGHV 212


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 517 NVDLHDDLGLESIQKYMKSASERYFDKAMRHDN--RLIVAXADYS 645
           N++LH D    ++  +++ A + Y+   + H N  R ++   D S
Sbjct: 288 NIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPS 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,491
Number of Sequences: 5004
Number of extensions: 66508
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)