Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P03
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0154 - 27049218-27049517,27049679-27050107                       29   5.8  
05_06_0241 - 26634632-26636263                                         28   7.7  
01_06_1724 - 39452858-39454309                                         28   7.7  

>01_06_0154 - 27049218-27049517,27049679-27050107
          Length = 242

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 89  HRHQPSEKYCGAISEGKLHTDFLPXLGGGISHPRLLSLXNPYPGPGRSSTWALPW 253
           H H   ++YCGA  +G+ + D +P  GGG S    LSL  P      ++   LPW
Sbjct: 34  HHHHHYKQYCGA-GDGE-YPD-VPYGGGG-SVDCTLSLGTPSTRRAEAAVAGLPW 84


>05_06_0241 - 26634632-26636263
          Length = 543

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 502 PWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAXADYSPNPDHAGASHRR 681
           P + R+V LH  +      K + +  +R    AMR+    I    D   + D AG + RR
Sbjct: 104 PRYHRSVQLHKTIAYNGDAKALVATIKRQERLAMRNMAASIGCFLDADDSHDRAGRARRR 163

Query: 682 R 684
           R
Sbjct: 164 R 164


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 231 QVPGRYPGCIDDIPPAYKISP*PCRVY 311
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,143,600
Number of Sequences: 37544
Number of extensions: 499674
Number of successful extensions: 1340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)