Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P03
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    38   0.006
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    38   0.011
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    32   0.56 
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    28   7.0  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = +1

Query: 238 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSRMSLRNKVTLYKTCIRPVMTYAS 417
           LG  +   + F  H +   + A F L  ++    K S  + +  + LYKT IRP + Y +
Sbjct: 180 LGFLISEKLDFSDHWRKCINLAKFQLANMFN---KYSTSNKKLMILLYKTFIRPRLEYGT 236

Query: 418 VVFAHAARTHIDTLQSLQSRFCR 486
           VV +   ++   T++S+Q+ F R
Sbjct: 237 VVSSPTKKSDEKTIESVQNAFTR 259


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +1

Query: 238 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSRMSLRNKVTLYKTCIRPVMTYAS 417
           LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254

Query: 418 VVFAHAARTHIDTL 459
            V++    + + TL
Sbjct: 255 AVYSPKPSSSLSTL 268


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/83 (26%), Positives = 40/83 (48%)
 Frame = +1

Query: 238 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSRMSLRNKVTLYKTCIRPVMTYAS 417
           LG  +   + F  H K   + A F L  ++      ++  +   + LYKT IRP + Y +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGT 206

Query: 418 VVFAHAARTHIDTLQSLQSRFCR 486
           VV +   ++    ++S+Q+ F R
Sbjct: 207 VVSSPTKKSDEKAIESVQNAFTR 229


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +1

Query: 229  VKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSRMSLRNKVTLYKTCIRPVMT 408
            V+ LG+  D  + F  HI  V   +   + R   ++   S  S +    LYKT + P+M 
Sbjct: 976  VRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMN 1032

Query: 409  YASVVFA 429
            Y S V+A
Sbjct: 1033 YCSEVYA 1039


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 298 RAAFILGRLYPMICKRSRMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSR 477
           RA     +   M+C+R   SL++++   K C R  M Y + +  +  +T  D + S  SR
Sbjct: 37  RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94

Query: 478 FCRL-AVGAPWFVRN 519
              L +VG+P  + N
Sbjct: 95  SSNLSSVGSPQSLAN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,447
Number of Sequences: 27780
Number of extensions: 390199
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)