Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_P02
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    30   2.5  
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215...    29   4.3  
06_01_1204 + 10397131-10398498                                         28   7.5  
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    28   7.5  
04_03_0226 - 12977443-12977895                                         28   7.5  
01_01_0068 + 532786-533139                                             28   7.5  
07_01_0905 + 7627032-7627079,7627399-7627845                           28   9.9  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    28   9.9  

>07_03_1632 +
           28271559-28271645,28272641-28272713,28273030-28273361,
           28273455-28274791,28275451-28275848,28275963-28277644,
           28277727-28277884,28278645-28278802,28279110-28279270,
           28279826-28280014
          Length = 1524

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 530 WTLTPYKKSGSILPSKISCT--KWLARTQLSEV 438
           W L PYK + S+LP K  C+  +WL      EV
Sbjct: 586 WRLLPYKMNPSLLPKKWKCSMLQWLPGMNRCEV 618


>06_01_0296 -
           2156895-2157160,2157435-2157527,2157932-2158031,
           2158634-2158738,2158832-2158972,2159056-2159568
          Length = 405

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
 Frame = -3

Query: 340 HLHVHDH-SDTXPWRR*YP---AYGDQP--MFVASAPAQPSTCSLPWLSPRKI 200
           H H H H S   P+RR  P   +Y   P     A+AP  P    L WL P ++
Sbjct: 49  HPHPHPHLSKILPFRRGRPLARSYDSPPPPAAAAAAPPPPPAWRLAWLPPARV 101


>06_01_1204 + 10397131-10398498
          Length = 455

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 289 PAYGDQPMFVASAPAQPSTCSLPWLSPRKIQSCCVVESGRR 167
           P +   P+  A  PA+ S   LPWL  +  +S   V  G R
Sbjct: 222 PVFAVGPLSPAPIPAKDSGSYLPWLDAQPARSVVYVSFGSR 262


>04_04_1299 +
           32450998-32451134,32451575-32452304,32452856-32453053,
           32453398-32454065,32454555-32454978,32455917-32456009,
           32456101-32456295,32456378-32456470,32456718-32456930,
           32457015-32457104,32457239-32457400
          Length = 1000

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 165 CSVTLL*DVSRRLPNLATSTAGQR 94
           C V  L   SRR PN+A +T+GQR
Sbjct: 881 CEVYTLLGRSRRFPNMAHATSGQR 904


>04_03_0226 - 12977443-12977895
          Length = 150

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 152 SVTEHTAAGFYDTTRLYLSWRKPWKRTSGRLSWS 253
           SVTE   A    T R    WR+ W+    R SW+
Sbjct: 47  SVTEAAVASVLMTWRRGSQWRRTWRGCQRRRSWA 80


>01_01_0068 + 532786-533139
          Length = 117

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 177 PAAVCSVTL-L*DVSRRLPNLATSTAGQRRLTPTSTP 70
           P A+   +L L  + RRLP+LAT+++G  R   +S+P
Sbjct: 39  PMAMAGASLPLPSLVRRLPDLATASSGDPREVASSSP 75


>07_01_0905 + 7627032-7627079,7627399-7627845
          Length = 164

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 751 VSDVKYKGKPRERA-SGEETDGPDLH 677
           V DVKYK KPR     G E D P  H
Sbjct: 57  VEDVKYKSKPRTALFQGREDDEPMTH 82


>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 497  WSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTSVMXXXXXXXLHSSPAVR 676
            WS T  +++ ++ G R P  Q +P   + G   + +R N  +SV        LH    +R
Sbjct: 1458 WSGTYSEQINAVAGARSPDQQTMPSPLMPGKQSH-SRSNSNSSVQFNSLTEDLHELRTLR 1516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,690,908
Number of Sequences: 37544
Number of extensions: 529667
Number of successful extensions: 1721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)