Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P01
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 175 9e-45
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.63
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 29 1.1
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.4
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.4
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 4.4
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 26 5.8
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 175 bits (425), Expect = 9e-45
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 1/128 (0%)
Frame = +1
Query: 313 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 489
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 490 VXKPSNPSSHEVVSWIKRXLKVEKTGHSGTLDPKVTGXLIVCIDRAHETRXNHKQNAGQR 669
+ KP+NPSSHEVV+W+K+ L+VEKTGHSGTLDPKVTG LI+C DRA TR Q + +
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRA--TRLVKSQQSAGK 126
Query: 670 SMVAVFNL 693
V V L
Sbjct: 127 EYVCVLRL 134
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 367 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 456
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 559 KTGHSGTLDPKVTGXLIV 612
K GH GTLDP +G L+V
Sbjct: 107 KIGHGGTLDPLASGVLVV 124
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 370 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 480
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 361 KRCPASSRSPKVRF*SRQLSEKLPTKHHPCFFSFSSLKVCRYRAAVPPSF 212
KRC A+++ ++ R+L E LP K P S S+ Y +++ P F
Sbjct: 23 KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.5
Identities = 31/118 (26%), Positives = 48/118 (40%)
Frame = +1
Query: 184 VRKDTC*FIKMTEVLQPGNDTLSEKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAY 363
+++D + ++ G S K +K NK ++ G+ PS SV +++
Sbjct: 136 MKEDITPVVNTSKQSSTGTQEESSKPEKSNKL-LAKSTLSLYGNQAFNPS-SVLPSNSSS 193
Query: 364 WPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVXKPSNPSSHEVVSWI 537
P ++ NV Y P F SPLK S N+ PS PSS VS +
Sbjct: 194 TP----KENKKNVNKETYQPNTFRRSPLKNDTGSVELS---NLYMPSPPSSALPVSLV 244
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 466 YVKSGFINVXKPSNPSSHEVVSWIKRXLKVEKTGHSGTLDPKVTGXL-IVCIDRAH 630
++K + + +P+N E V+W++ L E GH+ + L VC D H
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQDTLNEVCTDIIH 491
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 382 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 489
++DR + + NH +P P +P K P+ + ++ N
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDN 193
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 395 KRSKFFNNKGQ*AVSSFFT 339
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 496 KPSNPSSHEVVSWIKRXLKVEKTGHSGTLDPKVTGXLIV 612
KP PS H ++S+ K+E T ++ T K G IV
Sbjct: 564 KPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV 602
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 598 GXLIVCIDRAHETRXNHKQNAGQRSMVAVFNLAFQAV-XXYSQKS 729
G ++ IDR+ E + +KQN R V + L+ Q V +S++S
Sbjct: 19 GEIVKLIDRSSEIKQAYKQNFQNRRSVQMSGLSSQNVAMIFSKRS 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,827
Number of Sequences: 5004
Number of extensions: 62402
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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