Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_P01
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 178 4e-45
03_03_0094 + 14378953-14380728 174 8e-44
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 89 4e-18
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 69 5e-12
11_06_0293 + 22018128-22018556 66 3e-11
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 47 2e-05
02_05_0737 - 31328473-31330513,31331015-31331184 33 0.38
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 8.1
>07_03_1408 - 26353389-26355191
Length = 600
Score = 178 bits (434), Expect = 4e-45
Identities = 90/156 (57%), Positives = 108/156 (69%), Gaps = 9/156 (5%)
Frame = +1
Query: 244 TLSEKKKKKNKDGVSLGAFQT---------IGDFKIEPSESVKKLDTAYWPLLLKNFDRL 396
T S+KKK K+KD + A + I+P V LDT+ WPLLLKN+DRL
Sbjct: 17 TKSKKKKIKSKDAATAAAVDPPSLAEAEAKTDGYLIKPQSLVPSLDTSTWPLLLKNYDRL 76
Query: 397 NVRTNHYTPLPFGNSPLKRPISDYVKSGFINVXKPSNPSSHEVVSWIKRXLKVEKTGHSG 576
NVRT HYTPLP G+SPLKRPI++Y++ G IN+ KPSNPSSHEVV+WIKR L+V+KTGHSG
Sbjct: 77 NVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVDKTGHSG 136
Query: 577 TLDPKVTGXLIVCIDRAHETRXNHKQNAGQRSMVAV 684
TLDPKVTG LIVC+DRA TR Q + V V
Sbjct: 137 TLDPKVTGNLIVCVDRA--TRLVKSQQGAGKEYVCV 170
>03_03_0094 + 14378953-14380728
Length = 591
Score = 174 bits (423), Expect = 8e-44
Identities = 81/123 (65%), Positives = 95/123 (77%)
Frame = +1
Query: 316 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVX 495
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLD 113
Query: 496 KPSNPSSHEVVSWIKRXLKVEKTGHSGTLDPKVTGXLIVCIDRAHETRXNHKQNAGQRSM 675
KPSNPSSHEVV+WIKR L+VEKTGHSGTLDPKVTG LIVC+DRA TR Q +
Sbjct: 114 KPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRA--TRLVKSQQGAGKEY 171
Query: 676 VAV 684
V V
Sbjct: 172 VCV 174
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 89.0 bits (211), Expect = 4e-18
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 436 NSPLKRPISDYVKSGFINVXKPSNPSSHEVVSWIKRXLKVEKTGHSGTLDPKVTGXLIVC 615
+SPLK+PI+ ++ G IN+ KPSN SHEV++W K L +EKT H+GTLDPKVTG LIVC
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVC 76
Query: 616 IDRA 627
++RA
Sbjct: 77 VNRA 80
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 68.9 bits (161), Expect = 5e-12
Identities = 34/54 (62%), Positives = 38/54 (70%)
Frame = +1
Query: 523 VVSWIKRXLKVEKTGHSGTLDPKVTGXLIVCIDRAHETRXNHKQNAGQRSMVAV 684
VV+WIKR L+V KTGHSGTLDPKVTG LIVC+DRA TR Q + V V
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRA--TRLVKSQQGAGKEYVCV 149
>11_06_0293 + 22018128-22018556
Length = 142
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +1
Query: 523 VVSWIKRXLKVEKTGHSGTLDPKVTGXLIVCIDRAHETRXNHKQNAGQR-SMVAVFNLA 696
VV+WIKR L+V KTGHSGTLDPKVTG LIVC+D A +Q AG+ VA F+ A
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRL-VKSQQGAGKEYGCVARFHAA 116
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 436 NSPLKRPISDYVKSGFINVXKPSNP--SSHEVVSWIKRXLKVEKTGHSGTLDPKVTGXLI 609
N+ KR + V +N+ P +S V ++R + V+K GH+GTLDP TG LI
Sbjct: 291 NARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLI 350
Query: 610 VCIDRA 627
VC+ +A
Sbjct: 351 VCVGKA 356
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 538 KRXLKVEKTGHSGTLDPKVTGXLIVCIDRAHETRXNHKQNAGQRSMVAVFNLAFQAV-XX 714
KR K+E H LDPK ++ A NH NA S ++ A+ V
Sbjct: 9 KRNFKIELFKHRVELDPKYAERTWKVLEHAIHEIYNH--NASGLSFEELYRSAYNMVLHK 66
Query: 715 YSQKSXXGLGXTLXW 759
Y +K GL T+ W
Sbjct: 67 YGEKLYDGLERTMTW 81
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 250 SEKKKKKNKDGVSLGAFQTIGDFK-IEPSESVKKLDTA 360
SEK ++ N+DG S+ A I DF E ++ + DTA
Sbjct: 1609 SEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTA 1646
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,745
Number of Sequences: 37544
Number of extensions: 410987
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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