Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_O22
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 62 9e-11
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 59 6e-10
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 41 2e-04
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 41 2e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 41 2e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 39 0.001
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 33 0.048
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 31 0.19
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 5.5
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 26 7.3
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.6
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 9.6
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 62.1 bits (144), Expect = 9e-11
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = +3
Query: 279 GGLKTVKILKKPEPTVGESEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 458
G ++++ K P + ++I+ GLN+ D +R G +P P+I G E AG +
Sbjct: 12 GPSSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVV 69
Query: 459 EQVGENV-TNFKVGDQVVALPEYRAWAELVSVPAQYVYALPEGMSALDAVAITTNYVVAY 635
VG+ V +FKVGD+VV L + A+A+ +VP V + E + A A + AY
Sbjct: 70 AAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIASAALLQGLTAY 129
Query: 636 LLLFE 650
L+ E
Sbjct: 130 TLIEE 134
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 59.3 bits (137), Expect = 6e-10
Identities = 32/81 (39%), Positives = 51/81 (62%)
Frame = +3
Query: 267 LTGFGGLKTVKILKKPEPTVGESEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFEC 446
++GF LK + + P+ + EVL+++KA LN++DLI+ +G P + P + G +
Sbjct: 11 ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDG 68
Query: 447 AGEIEQVGENVTNFKVGDQVV 509
AG IE+VGE+V F+ GD VV
Sbjct: 69 AGIIEKVGEDVEGFEKGDSVV 89
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 282 GLKTVKILKKPEPTVGE-SEVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGE 455
G VKI + P+PT+ +V+++ AC + + D + G + K ILG E G
Sbjct: 44 GPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGI 102
Query: 456 IEQVGENVTNFKVGDQVV 509
+ + G+ V N ++GD+VV
Sbjct: 103 VAEKGDEVNNLEIGDRVV 120
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +3
Query: 330 ESEVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFECAGEIEQVGENVTNFKVGDQ 503
+ +V + +KA G+ D+ ++G I D K P ILG E AG + +VG+ V++ K GD
Sbjct: 29 DHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDP 88
Query: 504 VVALP 518
V P
Sbjct: 89 VAVEP 93
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = +3
Query: 336 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 515
EV I++ G+ D G D P ILG E AG +E VG VT +VGD V+AL
Sbjct: 39 EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 336 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 515
EV ++V + D G +D P +LG E AG +E +GE V N + GD V+ L
Sbjct: 36 EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 33.1 bits (72), Expect = 0.048
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 454 KSSKLAKMSPILRWATKWWLSPSTALGPSWCLYRPSTCTRCPKECLPW 597
+SS L K+ P+LR+ ++WL+ + Y PST + K PW
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLNGVVGTPEDFVSYLPSTDSNDKKFRKPW 201
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 336 EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 512
EV++RVK C + + QD++ + A+D P T I E ++ + EN K+G +
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112
Query: 513 LP 518
LP
Sbjct: 1113 LP 1114
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 563 VLGRYRHQLGPSAVLGESHHLVAHLKIGDIFAN 465
+LGRY L L +H + H+ I I+AN
Sbjct: 425 ILGRYPFLLRAYPELSNLYHKLLHISISSIYAN 457
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -2
Query: 487 KLVTFSPTCSISPAHSKPKMKGVFGGESMAP*RTIKSWKFRPQAFTRIRTSLSPTVGSGF 308
K FSP S+S H K K + + + SW P R + SP V S +
Sbjct: 491 KNTAFSPGTSLSTNHVKTKSRSAHNNSTSPFSTAVSSW-LNP---LRYPSDKSPRVISSY 546
Query: 307 LSILTVLRP 281
L + + +P
Sbjct: 547 LESVFISKP 555
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 583 PSGS-AYTYWAGTDT--SSAQARYSGRATTWSPTLKLVTFSPTCS 458
P G A+ +W+ + + +S+ A YSG T+SPT P+ S
Sbjct: 388 PRGQKAWEWWSASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPS 432
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 370 FRPQAFTRIRTSLSPTVGSGFLSILTVLRPPKPVSTTA 257
F P F + LS GS L +L++ KPV+ A
Sbjct: 41 FNPPHFAHLGMCLSIPKGSQLLLLLSITNADKPVAPAA 78
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 353 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 433
+S R L F SS+ RH++STE FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,842
Number of Sequences: 5004
Number of extensions: 58976
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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