Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_O16
(864 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 2.1
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.6
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 8.4
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 332 VSSERLWRPDVVL 370
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 332 VSSERLWRPDVVL 370
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 332 VSSERLWRPDVVL 370
V S+ +WRPD+VL
Sbjct: 101 VPSDHIWRPDIVL 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.6
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDXRLS 293
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 294 XNAGEWG 314
N E+G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.6
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDXRLS 293
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 294 XNAGEWG 314
N E+G
Sbjct: 118 WNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESESTVRILADLQMNWIDXRLSXNAGEWG 314
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESESTVRILADLQMNWIDXRLSXNAGEWG 314
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESESTVRILADLQMNWIDXRLSXNAGEWG 314
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESESTVRILADLQMNWIDXRLSXNAGEWG 314
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESESTVRILADLQMNWIDXRLSXNAGEWG 314
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESESTVRILADLQMNWIDXRLSXNAGEWG 314
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 311 GAAALGLVSSERLWRPDVVL 370
G + V SE +W PD+VL
Sbjct: 103 GGVEMLYVPSENIWLPDIVL 122
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.6
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +3
Query: 108 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 275
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 276 IDXRLS 293
D RL+
Sbjct: 68 TDPRLA 73
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 332 VSSERLWRPDVVL 370
V SE +W PD+VL
Sbjct: 97 VPSEHIWLPDIVL 109
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.0 bits (47), Expect = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 332 VSSERLWRPDVVL 370
V SE +W PD+VL
Sbjct: 97 VPSEHIWLPDIVL 109
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 653 RXAPPXHXXXPPPCXPPPXXP 715
R +PP PPP PP P
Sbjct: 36 RGSPPNPSQGPPPGGPPGAPP 56
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 8.4
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 108 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 275
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 276 IDXRLS 293
D RL+
Sbjct: 68 TDPRLA 73
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,442
Number of Sequences: 438
Number of extensions: 5146
Number of successful extensions: 38
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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