Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_O09
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.36 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    28   1.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 241 VRVHRANTGRSSNELDRQTTELERR 315
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 165 YVARSESIMRDSDVAFSHSAALAIVQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I+Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +1

Query: 676 GXPXVXXSXXSSPXTRPGTXPXAGXXXXXAGVPPGPAXPXXGXXXGXXXPPPXXG 840
           G P +  S   S  + PG    AG        P G A P  G   G   PPP  G
Sbjct: 82  GPPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRG--VGYTAPPPPAG 134


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 379 C*TRLQPPPGTTLSAPVYLITAPSPGIKRLDISTP 483
           C   L+PPP   + +  Y ++ PSP +    IS P
Sbjct: 149 CQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,218
Number of Sequences: 5004
Number of extensions: 54838
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)