Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_O08
(866 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 31 0.014
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.042
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.042
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.17
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.30
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.39
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.52
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 0.90
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 0.90
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 0.90
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 8.4
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW 322
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGE 319
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 31.1 bits (67), Expect = 0.014
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Frame = +2
Query: 101 SAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESESTVR 259
SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 11 SARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTN 70
Query: 260 IQADLQMNWIDKRLSWNAGEWGCSTWL 340
+ L+ W D + W+ E+G T L
Sbjct: 71 VW--LEHEWQDHKFQWDPAEYGGVTEL 95
Score = 23.0 bits (47), Expect = 3.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 339 WCPPERLWRPDVVXXN 386
+ P E +W PD+V N
Sbjct: 96 YVPSEHIWLPDIVLYN 111
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 65 PNKLWKPDILMYN 77
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 133 PNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.042
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 23.0 bits (47), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 348 PERLWRPDVVXXN 386
P +LW+PD++ N
Sbjct: 133 PNKLWKPDILMYN 145
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN 310
L +N
Sbjct: 95 LRFN 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.5 bits (58), Expect = 0.17
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
PP RLW+PDV+ N
Sbjct: 101 PPHRLWKPDVLMYN 114
Score = 23.4 bits (48), Expect = 2.8
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 304
+++ LL TY+ P +V++ L L ++ E + L++ W D +
Sbjct: 27 LLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLITNLWLKLEWNDVNMR 86
Query: 305 WNAGEWG 325
WN ++G
Sbjct: 87 WNVSDYG 93
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.6 bits (56), Expect = 0.30
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
PP+++W+PD+V N
Sbjct: 104 PPDKVWKPDIVLFN 117
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.6 bits (56), Expect = 0.30
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRESESTVRIQADLQMNWIDKR 298
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 299 LSWNAGEWG 325
L WN ++G
Sbjct: 82 LKWNPDDYG 90
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
P E +W PD+V N
Sbjct: 98 PSEHIWLPDIVLYN 111
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.39
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 298
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 299 LSWNAGEWG 325
L WN E+G
Sbjct: 95 LKWNPEEYG 103
Score = 24.2 bits (50), Expect = 1.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 321 GAAALGWCPPERLWRPDVVXXN 386
G + + P E +W PD+V N
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYN 124
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.8 bits (54), Expect = 0.52
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGEWG 325
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
P + +WRPD+V N
Sbjct: 102 PSDHIWRPDIVLYN 115
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 25.0 bits (52), Expect = 0.90
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 283
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 284 WIDKRLSWNAGEW 322
W D LSW ++
Sbjct: 99 WTDSHLSWKPSDF 111
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.90
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 322
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
P R+WRPD + N
Sbjct: 83 PYNRVWRPDTILYN 96
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 25.0 bits (52), Expect = 0.90
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 394 PXXFXXTTSGLHKRSGGH-QPSAAAPLPCVPTQS 296
P S + +GG PSA AP+P +P S
Sbjct: 391 PVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMS 424
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
P + +WRPD+V N
Sbjct: 106 PSDHIWRPDIVLYN 119
Score = 23.0 bits (47), Expect = 3.6
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWG 325
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 345 PPERLWRPDVVXXN 386
P + +WRPD+V N
Sbjct: 106 PSDHIWRPDIVLYN 119
Score = 23.0 bits (47), Expect = 3.6
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWG 325
W E+G
Sbjct: 92 WEPKEYG 98
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 8.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 351 ERLWRPDVVXXN 386
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,399
Number of Sequences: 438
Number of extensions: 5070
Number of successful extensions: 53
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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