Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_O06
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   123   2e-30
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   123   2e-30
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +2

Query: 233 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 412
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 413 VRIPKEQGSPFILAW 457
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 92.3 bits (219), Expect = 5e-21
 Identities = 48/88 (54%), Positives = 53/88 (60%)
 Frame = +1

Query: 544 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAXDVGKGXGQREFSGSXKLD 723
           GVDK TQF RYF            TSLCFVYPLDFARTRLA DVGK  G+REF+G     
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCL 163

Query: 724 XQXLQVRRSDRAVKRFGVSVQGIIXYRA 807
            +  +        + FGVSVQGII YRA
Sbjct: 164 TKIFKADGITGLYRGFGVSVQGIIIYRA 191



 Score = 78.2 bits (184), Expect = 8e-17
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = +3

Query: 435 GLLSFWRGNFANVIRYFPTQALNFAFKDKYRQVFLGG 545
           G LS+WRGN ANVIRYFPTQALNFAFKDKY+QVFLGG
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +2

Query: 233 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 412
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 413 VRIPKEQGSPFILAW 457
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 92.3 bits (219), Expect = 5e-21
 Identities = 48/88 (54%), Positives = 53/88 (60%)
 Frame = +1

Query: 544 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAXDVGKGXGQREFSGSXKLD 723
           GVDK TQF RYF            TSLCFVYPLDFARTRLA DVGK  G+REF+G     
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCL 163

Query: 724 XQXLQVRRSDRAVKRFGVSVQGIIXYRA 807
            +  +        + FGVSVQGII YRA
Sbjct: 164 TKIFKADGITGLYRGFGVSVQGIIIYRA 191



 Score = 78.2 bits (184), Expect = 8e-17
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = +3

Query: 435 GLLSFWRGNFANVIRYFPTQALNFAFKDKYRQVFLGG 545
           G LS+WRGN ANVIRYFPTQALNFAFKDKY+QVFLGG
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 500 ERLGREVPDDVGEVTTPE 447
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 500 ERLGREVPDDVGEVTTPE 447
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 501 NFAFKDKYRQVFLGGC 548
           NF  KDK ++V + GC
Sbjct: 594 NFDIKDKNKKVNVAGC 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,231
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)