Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_O04
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   122   6e-29
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   122   6e-29
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  122 bits (294), Expect = 6e-29
 Identities = 54/66 (81%), Positives = 60/66 (90%)
 Frame = +2

Query: 176 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 355
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 356 THRSGQ 373
           THRSGQ
Sbjct: 84  THRSGQ 89



 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 40/85 (47%), Positives = 54/85 (63%)
 Frame = +1

Query: 538 LKRFPSFPWVVADKVQEINKTKQAVIFLXRLKAWSDILKGVQSLXVFVLGKGKMRNRRRI 717
           ++  P  P VV D VQ   KTK+AV  L  +KA+ D++K   S  +   GKGK+RNRR +
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRA-GKGKLRNRRHV 202

Query: 718 QRKGSLIIFNKDQGXNPAXRXIPGV 792
           QR+G L++FN+D G   A R IPGV
Sbjct: 203 QRRGPLVVFNEDTGIVKAFRNIPGV 227



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 30/64 (46%), Positives = 34/64 (53%)
 Frame = +3

Query: 372 RGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 551
           + AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IP
Sbjct: 89  QAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIP 148

Query: 552 ELPL 563
           E+PL
Sbjct: 149 EVPL 152


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  122 bits (294), Expect = 6e-29
 Identities = 54/66 (81%), Positives = 60/66 (90%)
 Frame = +2

Query: 176 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 355
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 356 THRSGQ 373
           THRSGQ
Sbjct: 84  THRSGQ 89



 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 40/85 (47%), Positives = 54/85 (63%)
 Frame = +1

Query: 538 LKRFPSFPWVVADKVQEINKTKQAVIFLXRLKAWSDILKGVQSLXVFVLGKGKMRNRRRI 717
           ++  P  P VV D VQ   KTK+AV  L  +KA+ D++K   S  +   GKGK+RNRR +
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRA-GKGKLRNRRHV 202

Query: 718 QRKGSLIIFNKDQGXNPAXRXIPGV 792
           QR+G L++FN+D G   A R IPGV
Sbjct: 203 QRRGPLVVFNEDAGIVKAFRNIPGV 227



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 30/64 (46%), Positives = 34/64 (53%)
 Frame = +3

Query: 372 RGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 551
           + AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IP
Sbjct: 89  QAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIP 148

Query: 552 ELPL 563
           E+PL
Sbjct: 149 EVPL 152


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 376 PLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTS 278
           P+T P ST+++ T+ S +ST+     ST  VTS
Sbjct: 603 PITSPNSTSSSSTQVSWNSTTPITGTSTSKVTS 635


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 391 MLPKAPLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 218
           +LP A +T PM  TTT      + T++TP   T ++T ++        V+G   V+ I
Sbjct: 192 ILPMAAMTTPMEETTTTPM---EETTTTPMVET-MITPMVEAMTTPTEVVGRSMVSTI 245


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 120 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 43
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 538  LKRFPSFPWVVAD 576
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -1

Query: 575 SATTQGKLGNLFNNVSSSLNE 513
           SAT+  +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 531 HIIEKIPELPLGCSRQSPRDQQDQTGCH 614
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,234
Number of Sequences: 5004
Number of extensions: 56408
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)