Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_O01
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 208 5e-55
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.027
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 30 0.33
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.58
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.58
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.77
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.3
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 28 1.8
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.1
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 4.1
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 7.1
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 9.4
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 208 bits (509), Expect = 5e-55
Identities = 94/126 (74%), Positives = 111/126 (88%), Gaps = 1/126 (0%)
Frame = +3
Query: 279 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 455
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 456 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 635
+DKP+NPSSHEVV+W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 636 VARFQL 653
V +L
Sbjct: 129 VCVLRL 134
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 525 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 641
K GH GTLDP +G L+V + T+ + S + K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 30.3 bits (65), Expect = 0.33
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = +3
Query: 450 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 629
IN D P P SHE+V IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 630 EYVARFQLAFSPXRIFXKSP 689
EYV Q+ P ++ K P
Sbjct: 127 EYVNVSQMNIPP--VWAKMP 144
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 432 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 539
++K + +D+P+N E V+W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 333 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 422
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 348 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 488
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 336 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 446
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 633 YVARFQLAFSPXRIFXKSPQGLXXAAWDLLFPKGP 737
YVA Q + F P G WDLLFPKGP
Sbjct: 221 YVA-LQRMMNEENPFATLPNG-PTKVWDLLFPKGP 253
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 327 KRCPASSRSPKVRF*SRQLSEKLPTKHHPCFFSFSSLKVCRYRAAVPPSF 178
KRC A+++ ++ R+L E LP K P S S+ Y +++ P F
Sbjct: 23 KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 361 KRSKFFNNKGQ*AVSSFFT 305
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 459 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
+KP PS H ++S+ K+E T ++ T K G IV
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV 602
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.1
Identities = 31/118 (26%), Positives = 48/118 (40%)
Frame = +3
Query: 150 VRKDTC*FIKMTEVLQPGNDTLSEKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAY 329
+++D + ++ G S K +K NK ++ G+ PS SV +++
Sbjct: 136 MKEDITPVVNTSKQSSTGTQEESSKPEKSNKL-LAKSTLSLYGNQAFNPS-SVLPSNSSS 193
Query: 330 WPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWI 503
P ++ NV Y P F SPLK S N+ PS PSS VS +
Sbjct: 194 TP----KENKKNVNKETYQPNTFRRSPLKNDTGSVELS---NLYMPSPPSSALPVSLV 244
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 537 SGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVARFQLAFS 662
S +P C + CI+ + +K + GK+ AR +A++
Sbjct: 248 STAANPITDACAVKCIELVNKYLKRAVDNGKDEEARDNMAYA 289
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 45 YGRALCYIFKVLSIN 89
YG+ L ++FKVLSIN
Sbjct: 79 YGKQLPFLFKVLSIN 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,849
Number of Sequences: 5004
Number of extensions: 67562
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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