Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_O01
         (796 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010015-1|AAH10015.1|  514|Homo sapiens dyskeratosis congenita ...   218   2e-56
BC009928-1|AAH09928.1|  514|Homo sapiens dyskeratosis congenita ...   218   2e-56
AJ224481-1|CAA11970.1|  514|Homo sapiens dyskerin protein.            218   2e-56
AJ010395-1|CAB51168.1|  524|Homo sapiens dyskerin protein.            218   2e-56
AF067023-1|AAD20232.1|  514|Homo sapiens dyskerin protein.            218   2e-56
AF067008-1|AAD11815.1|  514|Homo sapiens dyskerin protein.            218   2e-56
U59151-1|AAB94299.1|  514|Homo sapiens Cbf5p homolog protein.         217   3e-56
BC030601-1|AAH30601.1|  349|Homo sapiens TruB pseudouridine (psi...    41   0.004
AL355340-1|CAH73219.1|  349|Homo sapiens TruB pseudouridine (psi...    41   0.004
AK223567-1|BAD97287.1|  349|Homo sapiens TruB pseudouridine (psi...    41   0.004
AF448144-1|AAL40350.1|  349|Homo sapiens TruB pseudouridine synt...    41   0.004
AB011085-1|BAA25439.2|  412|Homo sapiens KIAA0513 protein protein.     31   6.3  

>BC010015-1|AAH10015.1|  514|Homo sapiens dyskeratosis congenita 1,
           dyskerin protein.
          Length = 514

 Score =  218 bits (532), Expect = 2e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>BC009928-1|AAH09928.1|  514|Homo sapiens dyskeratosis congenita 1,
           dyskerin protein.
          Length = 514

 Score =  218 bits (532), Expect = 2e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>AJ224481-1|CAA11970.1|  514|Homo sapiens dyskerin protein.
          Length = 514

 Score =  218 bits (532), Expect = 2e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>AJ010395-1|CAB51168.1|  524|Homo sapiens dyskerin protein.
          Length = 524

 Score =  218 bits (532), Expect = 2e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>AF067023-1|AAD20232.1|  514|Homo sapiens dyskerin protein.
          Length = 514

 Score =  218 bits (532), Expect = 2e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>AF067008-1|AAD11815.1|  514|Homo sapiens dyskerin protein.
          Length = 514

 Score =  218 bits (532), Expect = 2e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>U59151-1|AAB94299.1|  514|Homo sapiens Cbf5p homolog protein.
          Length = 514

 Score =  217 bits (531), Expect = 3e-56
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 219 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 398
           +KK++K+     +   Q   +F I+P   V KLDT+ WPLLLKNFD+LNVRT HYTPL  
Sbjct: 15  KKKERKSLPEEDVAEIQHAEEFFIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74

Query: 399 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 578
           G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 579 CIDRATRLVKSQQNAGKEYVARFQL 653
           CI+RATRLVKSQQ+AGKEYV   +L
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRL 159


>BC030601-1|AAH30601.1|  349|Homo sapiens TruB pseudouridine (psi)
           synthase homolog 1 (E. coli) protein.
          Length = 349

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 498 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 641
           W KR  +  K GH GTLD    G L+V I   T+++ S  +  K Y A
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTA 151


>AL355340-1|CAH73219.1|  349|Homo sapiens TruB pseudouridine (psi)
           synthase homolog 1 (E. coli) protein.
          Length = 349

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 498 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 641
           W KR  +  K GH GTLD    G L+V I   T+++ S  +  K Y A
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTA 151


>AK223567-1|BAD97287.1|  349|Homo sapiens TruB pseudouridine (psi)
           synthase homolog 1 variant protein.
          Length = 349

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 498 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 641
           W KR  +  K GH GTLD    G L+V I   T+++ S  +  K Y A
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTA 151


>AF448144-1|AAL40350.1|  349|Homo sapiens TruB pseudouridine
           synthase-like protein 1 protein.
          Length = 349

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 498 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 641
           W KR  +  K GH GTLD    G L+V I   T+++ S  +  K Y A
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTA 151


>AB011085-1|BAA25439.2|  412|Homo sapiens KIAA0513 protein protein.
          Length = 412

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 221 EEKEKKQGWCFV--GSFSDNWRL-QNRTFGEREEAGHRLLAFVVEK 349
           EE+EK++ WC +      D+ R  +N TFG+     H +LAF + K
Sbjct: 333 EEEEKREKWCHMTQEERDDSLRFNENITFGQLGTFTHNMLAFGLNK 378


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,057,392
Number of Sequences: 237096
Number of extensions: 2465566
Number of successful extensions: 5821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5804
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)