Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_N23
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.013
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.039
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.068
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.16
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.36
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.48
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.63
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.9
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.4
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 4.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 7.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 7.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -2
Query: 848 PPTPP--PPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
P PP P G PP PP P PP P PP P A AP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPP-LPAGMPAAPPLPPAAPAP 476
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -2
Query: 848 PPTPP-PPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
P PP PP PP P P PP P A P P AP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 29.9 bits (64), Expect = 0.48
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -2
Query: 848 PPTPPPP-GEXXXPPTPPXXPXTP-PQRPXXHATXPPRXP 735
PP PPP G PP P P P P ++T P P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP 293
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = -2
Query: 848 PPTPPPPGEXXXP--PTPPXXPXTPPQRPXXHATXPPRXP 735
PP PPPP P PP PP P A R P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -2
Query: 848 PPTPPPPG-EXXXPPT-PPXXPXTPPQRPXXHATXPPRXPXA 729
PP P PP PP+ PP P + P PP P A
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -2
Query: 830 PGEXXXPPTPPXXPXT-PPQR-PXXHATXPPRXP 735
P PP PP P + PP+R P A PP P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIP 257
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPT-PPXXPXTPPQRPXXHATXPPRXP 735
PP+ PP PP+ PP P P P + P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 26.2 bits (55), Expect(2) = 1.2
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -2
Query: 836 PPPGEXXXPPTPP-XXPXTPPQRPXXHATXPPRXPXAXAP 720
PP G PP PP P T Q P ++ P A P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2
Query: 848 PPTPPPP 828
PP PPPP
Sbjct: 311 PPPPPPP 317
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 35.1 bits (77), Expect = 0.013
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
P PPPP PP+ P P PP P PP P + AP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAP------PPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 836 PPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
PP PP PP PP P A PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPA-GPPSAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.039
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPP 744
PPT PP PP+P P P + P ++ PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
Score = 30.3 bits (65), Expect = 0.36
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -2
Query: 845 PTPPPPGEXXXPPTP-PXXPXTPPQRPXXHATXPPRXP 735
P PP P PPT P P PP P P + P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Frame = -2
Query: 848 PPTP---PPPGEXXXPPTPPXXPX-TPPQRPXXHATXPPRXPXAXAP 720
PP P PP PP P P +PP P + PP P P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 29.1 bits (62), Expect = 0.83
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = -2
Query: 848 PPTP--PPPGEXXXPPTP---PXXPXT--PPQRPXXHATXPPRXP 735
PP P PPP PP P P P + PP +P PP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Frame = -2
Query: 848 PPTP-----PPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
PPTP PP P PP P + P P P P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.068
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 736 GXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPG--GGGVGG 849
G GG G GG G GG+GG PG GGG GG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 30.7 bits (66), Expect = 0.27
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 736 GXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPGG-GGVG 846
G GG G GG+ G GG GG PGG GG G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +3
Query: 756 GVARGSLRGGXGXXXGGRG--XGXLXGGGGGGG 848
G G GG G GG G G L G GGG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 753 RGVARGSLRGGXGXXXGGRGXGXLXGGGGGGG 848
RG ARG RGG GGRG GG GG
Sbjct: 32 RGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 31.1 bits (67), Expect = 0.21
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 753 RGVARGSLRGGXGXXXGGRGXGXLXGGGGGG 845
RG RG RGG G G RG GG GG
Sbjct: 36 RGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +1
Query: 736 GXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPGGGGVGG 849
G RGG G GG G GG GG GG GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +1
Query: 721 GAXAXGXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPGGGGVG 846
G G RGG G GG G GG GG GG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 736 GXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPGG--GGVGG 849
G RGG A GR GG G GG GG GG GG GG
Sbjct: 30 GGRGG--ARGGGR-GGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 721 GAXAXGXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPGGGGV 843
G G RGG GR G G G GG + GG V
Sbjct: 33 GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 777 RGGXGXXXGGRGXGXLXGGGGGGG 848
RGG G GGRG G G GG GG
Sbjct: 8 RGGRGGSRGGRG-GFNGGRGGFGG 30
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +1
Query: 736 GXRGGXVAWXXGRCGGVXGXXGGVGGXXXSPGG--GGVGG 849
G GG + GR G G GG G GG GG GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 724 AXAXGXRGGXVAWXXGRCGGVXGXXGGVGGXXX-SPGGGGVG 846
A G RGG GR GG G GG GG + GGG G
Sbjct: 2 AYTPGSRGGRGGSRGGR-GGFNGGRGGFGGGRGGARGGGRGG 42
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -2
Query: 845 PTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXA 723
P PPPP P P P PP P PP P A
Sbjct: 732 PPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPPGVA 771
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPP 777
PP PPPPG P PP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPP--PPPPP 783
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = -2
Query: 845 PTPPPPGEXXXPPTP-PXXPXTPPQRPXXHATXPPRXP 735
PTP P PP P P PP P PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = -2
Query: 845 PTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPP 744
P PPP PP PP P P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = -2
Query: 848 PPTPPPP---GEXXXPPTPPXXPXTPPQRPXXHATXPPRXP 735
PP PPPP PP PP P +A P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.36
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 223 VRVHRANTGRSSNELDRQTTELERR 297
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPP-RXPXAXAP 720
PP P P PP PP P T P P A PP P A AP
Sbjct: 1198 PPVPKP--SVGVPPVPP--PSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
PP P P PP PP P P P PP P + AP
Sbjct: 1179 PPVPKPAA--GVPPVPP--PSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
PP P P PP P PP P A PP P + AP
Sbjct: 1159 PPVPKP--SVAAPPVPAPSSGIPPV-PKPAAGVPPVPPPSEAP 1198
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPP-RXPXAXAP 720
PP PPP PP P PP P +T PP P A P
Sbjct: 1189 PPVPPP---SEAPPVPKPSVGVPPVPPP--STAPPVPTPSAGLP 1227
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPP-RXPXAXAP 720
PP PPP PP P PP P A PP P + AP
Sbjct: 1208 PPVPPP---STAPPVPTPSAGLPPV-PVPTAKAPPVPAPSSEAP 1247
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 765 RGSLRGGXGXXXGGRGXGXLXGGGGGG 845
RG RGG G GG G G GG GGG
Sbjct: 140 RGGFRGGRGGSRGGFG-GNSRGGFGGG 165
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 765 RGSLRGGXGXXXGGRGXGXLXGGGGGG 845
RG RGG G G G GG GGG
Sbjct: 147 RGGSRGGFGGNSRGGFGGGSRGGFGGG 173
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 753 RGVARGSLRGGXGXXXGGRGXGXLXGGGGGG 845
RG G RGG G G G GG GG
Sbjct: 159 RGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Frame = -2
Query: 845 PTPPPPGEXXXPPTPP---XXPXTPPQRPXXHATXPPRXPXAXA 723
P PP GE PPT P P P + P+ P A A
Sbjct: 926 PPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAA 969
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPP 777
PP PPPP P PP P PP
Sbjct: 9 PPPPPPPPGFEPPSQPP--PPPPP 30
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 146 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 48
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Frame = -2
Query: 848 PPTPPP-PGEXXXPPTPPXXPXTPPQRP 768
PPTP P P PP PP P P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMP 758
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 768 GSLRGGXGXXXGGRGXGXLXGGGGGGG 848
G RGG G G G G G GGG G
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRG 473
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -2
Query: 173 WSTGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLF 6
WS G + +ESI+ + +L ++ R + +N S H + T +F
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIF 297
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = -2
Query: 848 PPTPPPPG-EXXXPPTPPXXPXTPPQRPXXHATXPPRXPXAXAP 720
PP PPP PP+ PP P AT P AP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = -2
Query: 848 PPTPPPPGEXXXPPTPPXXPXTPPQRPXXHATXPPRXP 735
PP P E P PP P P PP P
Sbjct: 667 PPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPLPP 704
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -2
Query: 209 HVSNAGSG*LRFWSTGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -2
Query: 209 HVSNAGSG*LRFWSTGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,377
Number of Sequences: 5004
Number of extensions: 53831
Number of successful extensions: 355
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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