Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_N19
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   200   2e-52
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   199   3e-52
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  200 bits (487), Expect = 2e-52
 Identities = 91/164 (55%), Positives = 120/164 (73%)
 Frame = +3

Query: 177 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 356
           GYKAGMTH+VR+ DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48  GYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWA 107

Query: 357 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCXVVRVIAHTQ 536
           EH+SE+ +RRFYKNW+             + +    +SI ++ +++ +YC VVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQ 165

Query: 537 MKLLKQRQKKAXIMEIQLNGGTIXDXVKWAXXHLEKPXPXXSVF 668
           ++     QKKA +MEIQ+NGG++ D V+WA  H EK     S F
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTF 209



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL 47


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  199 bits (486), Expect = 3e-52
 Identities = 90/164 (54%), Positives = 120/164 (73%)
 Frame = +3

Query: 177 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 356
           GYKAGMTH+VR+ DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48  GYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWA 107

Query: 357 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCXVVRVIAHTQ 536
           EH+SE+ +RRFYKNW+             + +    +SI ++ +++ +YC VVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQ 165

Query: 537 MKLLKQRQKKAXIMEIQLNGGTIXDXVKWAXXHLEKPXPXXSVF 668
           ++     QKKA +MEIQ+NGG++ D V+WA  H EK     S F
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTF 209



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL 47


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 38  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 310 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 462
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 389 LQKLVQMQEEGFH*SQ*EMAG*AWTQINRKRFQEDDPLLXCC-KSHCPHSNEAVKTATKE 565
           L KL+Q+        +  M+   +  I+ K+F+E D  L CC +SH    ++      ++
Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQ 343

Query: 566 GSHYGN 583
            + +GN
Sbjct: 344 SNDFGN 349


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 467  FASKLILPFLTGFSESLLLAFVPVFVEATST 375
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,373
Number of Sequences: 5004
Number of extensions: 57106
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)