Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_N17
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   1.0  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.4  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   4.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   4.1  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    26   5.5  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   7.2  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   7.2  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   7.2  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   7.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.5  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   9.5  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -2

Query: 381 RRTVMSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSI-DCDICESFASINLSRLLIRG 205
           R ++     N  R P P    R+    P+F   +S+LS+   D+     S       + G
Sbjct: 687 RESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSG 746

Query: 204 SSTPSDTFSVF 172
              PS + S++
Sbjct: 747 QQRPSSSMSLY 757


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -2

Query: 360 SFNSKRVPLPPFLARNKATAPAFSIPSSNLSID---CDICESFASINLSRL-LIRGSSTP 193
           S  + + P P   A N  T+PA   P++  S D    D       ++ S    + GSSTP
Sbjct: 224 SSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283

Query: 192 SDTFS 178
           S+T S
Sbjct: 284 SNTSS 288


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 506 QVAHPARKRHTIEQSLTTCFAPIPL 432
           ++AHP    H + QSL +CF  + L
Sbjct: 188 EIAHPPSYDHRLHQSLLSCFLVVLL 212


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = -2

Query: 429 RPTYTLICLSTAATLFRRTVMSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSIDCDIC 250
           RP++TL  LS+ A          S  S   P PP   ++ AT    S+P S    D  + 
Sbjct: 364 RPSHTLSELSSPALTSENL---SSKPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDPSVA 420

Query: 249 ESFASINLSRLLIRGSSTPSDTFSV 175
            S +S +   ++++GS    DT SV
Sbjct: 421 ASSSSSSQLDVVLKGSI--PDTSSV 443


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 665 CCKCRKSIDAGTSATCTRPCLPPE 594
           CC+C     + ++AT  + CLPPE
Sbjct: 174 CCQCLAISISYSTATSIQLCLPPE 197


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 569 GPCPTIAYGVEQCARVSAPARQVAHPARKRHTIEQSL 459
           GP  TI   +++ A V++P+R  +    K+ T   SL
Sbjct: 636 GPTSTIGKALQRVASVTSPSRHNSDSKEKKQTKSPSL 672


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 321 ARNKATAPAFSIPSSNLSIDCDICES 244
           A   ++AP+FS  S N S D D C S
Sbjct: 21  ASTVSSAPSFSFVSGNESADLDSCAS 46


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +2

Query: 29  MSVRFVRTILVLLAIVHNSRALVDEVVDVLKLGKEIGEEIIASWNVVGKTLNV 187
           +S RF+R I +LL+ V  SRA  +++VDV        E+I   W  V  TL++
Sbjct: 42  VSSRFMRLIELLLSKVDRSRA--EDIVDV--------EDIDNRWAEVSDTLDI 84


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 374 PSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPA 279
           PS    +TQ+ F ++R+W  T P  + S F A
Sbjct: 108 PSSGRFNTQSTFPTIRNWICTNPNFKLSFFSA 139


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 465 KPN---NVLRSNSS*RPTYTLICLSTA 394
           KPN   N + SN +  P Y+ +CLST+
Sbjct: 500 KPNTYKNTILSNENNTPNYSNVCLSTS 526


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 698 GVSLYLGPGLXCCKCRKSIDAGTSATCTRPCLPPELPRRFAAEGP 564
           GV LY  PG       K++   TSAT  R  +  EL +++  +GP
Sbjct: 227 GVILYGAPGTGKTLLAKAVANQTSATFLR-VVGSELIQKYLGDGP 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,377
Number of Sequences: 5004
Number of extensions: 60218
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)