Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_N16
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   111   9e-26
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    30   0.34 
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   4.2  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   5.5  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.7  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  111 bits (268), Expect = 9e-26
 Identities = 52/93 (55%), Positives = 64/93 (68%)
 Frame = +1

Query: 73  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 252
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 253 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 351
           KVRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +2

Query: 353 RRNKSVESLQINVQRIKEYRARLILFPK 436
           RRN+S ESLQ NV+RIK Y A LI+FP+
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPR 128


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
 Frame = -3

Query: 450  LSFLPFGNSIRRALYSFIL*TLICNDSTDLLRLTGI------YS-NSNRSGKYWVQSCGP 292
            +S  P GN++  A   F   + +   S   L++ G+      YS NS         S   
Sbjct: 1153 ISVTPKGNNMYDATVQFTTSSTMSKKSLSELKILGLSQTYLLYSYNSKVDNISNPGSWTS 1212

Query: 291  NFTKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 166
              T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1213 TVTVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 273 IHSS*N*GRRIEPSICPNDWNCCRSPLDATSLLNHCKSMFKE 398
           +H S N G  ++P +  N WN     +D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 2   TGFLRYFLCRGKTPTSKWARGII*YLMDISTRIGKDLLKLGLTSQLDD 145
           +GFL Y L R   P    ARG + Y       +G+DLL+ G+TS + D
Sbjct: 57  SGFLHYQLHRAAAPKYD-ARGSLLY-------VGQDLLQEGVTSYMVD 96


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 266 VEDSLFVKLGPQD*TQYLPERLELL 340
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,842
Number of Sequences: 5004
Number of extensions: 52376
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)