Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_N13
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.002
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.20 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.26 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.3  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.3  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/54 (35%), Positives = 19/54 (35%)
 Frame = +3

Query: 651 LXGNPXPGPAXXXGTPGPRTAPVPXPGXRXAPXPXAPXXLXXGXXGPXPXXAPP 812
           L   P P PA    TP P   PVP P       P  P        GP P   PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +3

Query: 663  PXPGPAXXXGTPGPRTAPVPXPGXRXAPXPXAPXXLXXGXXGPXPXXAPPVXXPA 827
            P P P+     P P  A  P P    AP    P         P P  APPV  P+
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPP--VPKPSVAAPPVPAPSGAPPVPKPS 1165



 Score = 30.3 bits (65), Expect = 0.35
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +3

Query: 663  PXPGPAXXXGTPGPRTA--PVPXPGXRXAPXPXAPXXLXXGXXGPXPXXAPPVXXPA 827
            P P P+     P P  A  PVP P     P P     +      P P  APPV  P+
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV---PPVPPPSEAPPVPKPS 1204



 Score = 29.9 bits (64), Expect = 0.46
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
 Frame = +3

Query: 663  PXPGPAXXXGTPGPRTA--PVPXPGXRXAPXPX------APXXLXXGXXGPXPXXAPPVX 818
            P P P+     P P  A  PVP P     P P        P         P P  APPV 
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143

Query: 819  XPA 827
             P+
Sbjct: 1144 KPS 1146



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +3

Query: 669  PGPAXXXGTPGPR-TAPVPXPGXRXAPXPXAPXXLXXGXXGPXPXXAPPVXXPA 827
            P P+     P P    PVP P     P P     +      P P  APPV  P+
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPV---PAPSGAPPVPKPS 1127



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +3

Query: 669  PGPAXXXGTPG-PRTAPVPXPGXRXAPXPXAPXXLXXGXXGPXPXXAPPVXXPA 827
            P PA   G P  P+ A    P    +  P  P         P P  APPV  P+
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 342
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 396 PPPGTTLSXARVSNNGSA 449
           PPP   +  AR SNNG+A
Sbjct: 157 PPPYPNVEAARASNNGAA 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,570
Number of Sequences: 5004
Number of extensions: 44457
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)