Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_N07
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...   159   6e-40
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   3.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   7.2  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   9.5  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    25   9.5  

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score =  159 bits (385), Expect = 6e-40
 Identities = 63/119 (52%), Positives = 89/119 (74%)
 Frame = +1

Query: 190 NRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEI 369
           N+Q WED +FP +C+ CLGDN Y+RMTKE  G+ECKICS+P T+FRW      +  KT+I
Sbjct: 10  NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQI 69

Query: 370 CQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESXLSNSD 546
           C  C++ KN CQ+C+LDL++GLPI +RDAALK+ +  P N++N+E++ QN +  LSN +
Sbjct: 70  CVGCARYKNCCQSCMLDLQFGLPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGE 128


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 181 NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPF 315
           NT+    W  A F I C  C      + + + +    CK C+ PF
Sbjct: 54  NTHPFLPWRKAKFHIPCVICGACKNSLTVEEYRSTVHCKYCNHPF 98


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 448 RDAALKVQDDLPRNEVNKEYYIQNLESXLSNSDPTQPTNSLKSKGSSDLLVR 603
           R+A  K Q+DL +N         NL+S  ++       + L  K +SD  +R
Sbjct: 153 RNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIR 204


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 397 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLE-SXLSNSDPTQP 558
           VC      LEYGL     D A K   +    E  + + IQ+LE   +  + P +P
Sbjct: 452 VCMYIDDGLEYGLFRHAGDGAFKPATNYENFEYEERFLIQDLEVIGVDTTKPVEP 506


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 421 LEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESXLSNSDPTQPTNSLKSKGSSDLLV 600
           + Y +  +  D++ +++  + RN  N   YI+NL   L   DP+    +LK K ++ L  
Sbjct: 648 ISYAMTEEQIDSSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPS--LLALKQKTATMLAA 705

Query: 601 RL 606
            L
Sbjct: 706 ML 707


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 306 KTFHSVSMVSWSKNAFQENGNMPDLFET 389
           K+ H  +M+ +  +A +EN N+ DLFET
Sbjct: 145 KSKHGSNMIHFEASA-KENTNVTDLFET 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,737
Number of Sequences: 5004
Number of extensions: 64962
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)