Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_N07
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif prote...   282   9e-76
AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens ...   282   9e-76
U39402-1|AAC99998.1|  367|Homo sapiens 199G4 protein.                  37   0.074
AK097638-1|BAC05128.1|  141|Homo sapiens protein ( Homo sapiens ...    31   6.4  

>BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif protein
           22 protein.
          Length = 420

 Score =  282 bits (692), Expect = 9e-76
 Identities = 122/159 (76%), Positives = 140/159 (88%), Gaps = 1/159 (0%)
 Frame = +1

Query: 160 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 339
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG 60

Query: 340 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQN 519
            RMRFKKTE+CQTCSKLKNVCQTCLLDLEYGLPIQVRDA L  +DD+P+++VNKEYY QN
Sbjct: 61  VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN 120

Query: 520 LESXLSNSDPTQPTNSL-KSKGSSDLLVRLXRTPPYYXK 633
           +E  +SNSD T+P   L K+  +SD+L++L RT PYY +
Sbjct: 121 MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKR 159


>AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10290 fis, clone MAMMA1002385, weakly similar to
           RIBONUCLEOPROTEIN RB97D. ).
          Length = 420

 Score =  282 bits (692), Expect = 9e-76
 Identities = 122/159 (76%), Positives = 140/159 (88%), Gaps = 1/159 (0%)
 Frame = +1

Query: 160 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 339
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG 60

Query: 340 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQN 519
            RMRFKKTE+CQTCSKLKNVCQTCLLDLEYGLPIQVRDA L  +DD+P+++VNKEYY QN
Sbjct: 61  VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN 120

Query: 520 LESXLSNSDPTQPTNSL-KSKGSSDLLVRLXRTPPYYXK 633
           +E  +SNSD T+P   L K+  +SD+L++L RT PYY +
Sbjct: 121 MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKR 159


>U39402-1|AAC99998.1|  367|Homo sapiens 199G4 protein.
          Length = 367

 Score = 37.1 bits (82), Expect = 0.074
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 535 SNSDPTQPTNSL-KSKGSSDLLVRLXRTPPYYXK 633
           SNSD T+P   L K+  +SD+L++L RT PYY +
Sbjct: 73  SNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKR 106


>AK097638-1|BAC05128.1|  141|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40319 fis, clone TESTI2030754. ).
          Length = 141

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 154 HAMATSKSTNTYNRQNWEDADF--PILCQTCLGDNPYIRMTKEKY-GKECKICSRPFTVF 324
           H    S ST+   R+ WEDADF  P+L Q C   NP +   K  +  KEC+    PF   
Sbjct: 62  HGNEVSGSTS---REVWEDADFICPVLKQ-C--TNPKLNENKNIHQAKECE--KSPFLSL 113

Query: 325 ----RWCPGARMR--FKKTEICQTCSK 387
               +W PG   R     T +C  CS+
Sbjct: 114 SPHQQWKPGLPRRNDALPTSLCLCCSE 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,073,877
Number of Sequences: 237096
Number of extensions: 2206789
Number of successful extensions: 3416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3414
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)