Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_N01
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 27 1.8
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.4
07_03_1136 + 24218601-24218734,24218769-24219906 29 3.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 4.8
07_03_1382 - 26170563-26170631,26171151-26171843 28 7.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.8
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084... 28 7.8
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 28 7.8
07_01_0080 + 587674-588510 23 9.2
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.5 bits (58), Expect(2) = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = -1
Query: 762 PPXPPPPGXXXXPXXXXGXGXPPXRXGXXGAHXXPRXNXPP 640
PP PPPP P G PP G P+ PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPP-PPPPPKGPSPP 365
Score = 21.4 bits (43), Expect(2) = 1.8
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 801 PXXXHAXAGXQRXPPXPPPP 742
P A A PP PPPP
Sbjct: 300 PQSIAAAAVASPAPPPPPPP 319
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 256 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 167
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +2
Query: 683 PXRXGGXPSPXXXXGXXXXPGGGGXGGXRWXPAXAXXXXG*R 808
P GG P P G PGGGG GG P A G R
Sbjct: 91 PPGGGGAPGP-LGGGGARPPGGGGGGGPPSLPPGAGGGGGAR 131
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -1
Query: 786 AXAGXQRXPPXPPPPGXXXXPXXXXGXGXPPXRXGXXGAHXXPRXNXPPXA 634
A AG + P PPPP P PP G H P PP A
Sbjct: 265 ASAGGGQVPAAPPPPAGPPPPAPPP---LPPSHHHHHGHHPPPPHPLPPGA 312
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -1
Query: 801 PXXXHAXAGXQRXPPXPPPPGXXXXPXXXXGXGXPPXRXGXXG 673
P + AG PP PPPP P PP G G
Sbjct: 336 PAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAG 378
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = -1
Query: 762 PPXPPPPGXXXXPXXXXGXGXPP 694
PP PPPP P PP
Sbjct: 564 PPPPPPPPPPPLPQSNYASSQPP 586
Score = 23.0 bits (47), Expect(2) = 4.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = -1
Query: 813 DXRXPXXXHAXAGXQRXPPXPPPP 742
D + P A PP PPPP
Sbjct: 531 DRKLPSPSPTAAAPPPPPPPPPPP 554
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -1
Query: 786 AXAGXQRXPPXPPPPGXXXXPXXXXGXGXPPXRXGXXGAHXXPRXNXPP 640
A A Q PP PPPP PP R G + PP
Sbjct: 176 AKAAAQLGPPPPPPPQPSGDANENPPPPPPPLRTGVGNSDGRRARRDPP 224
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 283
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_04_0209 +
23607749-23607893,23607990-23608043,23608156-23608433,
23609524-23609894,23610033-23610096,23610472-23610603
Length = 347
Score = 28.3 bits (60), Expect = 7.8
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = -1
Query: 417 ERSPRRWLQRRLAVPRQASTS--VPRTPAKCCSPIRPAFQLSRLSIQFI*RSASIRTVDS 244
E P W + A R++ PRTP + + I A Q SRL I +A R+
Sbjct: 123 ENVPPVWAVKATATKRRSPLPDWYPRTPLRDITAIAKAIQRSRLRI----AAAQQRSQTP 178
Query: 243 DSRMLACLKCRVRLTTILESGGDSRSYVAR-SESIMRDSDVAFS 115
+ C + R L +E G +S VA + S+ +DS FS
Sbjct: 179 EQNTPHCTEVRDSLD--VEPGINSTQIVATPASSLAKDSLKIFS 220
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 789 HAXAGXQRXPPXPPPPG 739
HA R PP PPPPG
Sbjct: 26 HAAVAGARAPPPPPPPG 42
>07_01_0080 + 587674-588510
Length = 278
Score = 23.4 bits (48), Expect(2) = 9.2
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = -1
Query: 762 PPXPPPPGXXXXPXXXXGXGXPP 694
PP PPPP P PP
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPP 115
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 777 GXQRXPPXPPPP 742
G R PP PPPP
Sbjct: 86 GMFRRPPPPPPP 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,283
Number of Sequences: 37544
Number of extensions: 342515
Number of successful extensions: 2608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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